Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_D01
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.7  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   3.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 260 LGHSAVCGAAQRGRYEQGTCGALA 331
           L +S++ G  +RG+YE+ T G ++
Sbjct: 600 LPYSSLYGRFKRGKYEEPTVGEIS 623


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 19/70 (27%), Positives = 24/70 (34%)
 Frame = +3

Query: 204 LLDEASAFNEGAATEPELRWATQPYAVRPNEGDTNKARVEPSHTTVLLFPGQGSQHVGMG 383
           LL   S F  G   E    +A   YA++ NE   N        T+           V   
Sbjct: 517 LLVITSTFGNGDPPENGEAFAQNLYAMKMNETYINSGNKISLATSKSFIKANSQTEVSNS 576

Query: 384 KKLMHLPPVR 413
           KKL  L  +R
Sbjct: 577 KKLDRLDSLR 586


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 369 HVGMGKKLMHLPPVREL 419
           H G G  ++ +PP R+L
Sbjct: 85  HTGFGGSIITIPPTRKL 101


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 266 HSAVCGAAQRGRYEQGTC 319
           HS V GA  R  YE   C
Sbjct: 703 HSVVSGALDRLHYETDPC 720


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 86  KVPNQL*NDEHVRKSKSRFKSGTK 157
           +VP+ L ND    K   R +SG K
Sbjct: 351 RVPDDLLNDLAAHKMHGRGRSGKK 374


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,527
Number of Sequences: 438
Number of extensions: 2636
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)