Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_C21
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    27   2.3  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    27   4.1  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    25   9.5  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.5  
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    25   9.5  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   9.5  

>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 592 VQLKMGPQFQNLPM--RDGVDWQINKTAYLWKDESNFLLSTKFLDWFK 729
           + L    +F   P+   + VD++I  T YL+    + L    FLDW +
Sbjct: 317 ITLSSSIEFTEFPLGFNENVDFEILGTVYLFLRTPSILNRLNFLDWHR 364


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -1

Query: 597 LNIAGMSGFKFYIALVSIICFLVEAKRHTYFDNHVEFIGFXYTHIVVVTPGMM 439
           LN +    +KF I +V ++CF + +    +FD H++F      H+ +V  G +
Sbjct: 274 LNASFDGSYKFPIPIV-LLCFFLYSLLTPFFDIHLQF-QLIVMHMSIVQVGFI 324


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 128 EQYYQPHHNRSVRKNNQREKRKRASIETAGLRSRNAKKGLA 250
           E  ++ H N SVR++N R  +   S++   L+S     G A
Sbjct: 843 ESNFRNHSNPSVRRSNLRVGKTVESVQNTKLKSVENDSGKA 883


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 125 WEQYYQPHHNRSVRKNNQREKRKRASIETAGLRSRNAK 238
           WE+  Q   + SV KN+   KRKR   +   L  +  K
Sbjct: 27  WERSQQGQISESVVKNHSPSKRKRRPSKEPSLSPKRRK 64


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +1

Query: 277 TNLESLLADISVRYIQLKEXDFELHYKVLDTIFQNLHKKMKEIDPYY 417
           T  +S +   SV + ++KE   ++ Y++    F+N ++  KEI  +Y
Sbjct: 557 TKAKSAVETGSVPWSKIKESTSDIFYELTSMKFENPNEGEKEIVEHY 603


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = -1

Query: 510 YFDNHVE----FIGFXYTHIVVVTPGMMYRARISXVVWINFF 397
           YF +H E    F+G  Y   ++++P +      S  VW+N F
Sbjct: 80  YFLDHTEPDELFVGLGYWSSLLLSPTLNAGTSNSDTVWVNGF 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,122,537
Number of Sequences: 5004
Number of extensions: 62449
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)