Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_C21
         (801 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0289 - 14725832-14726114,14726216-14726298,14726432-147265...    30   1.9  
12_02_0423 + 18944555-18945226,18945309-18945545                       29   5.7  
05_01_0213 - 1606383-1606816,1607695-1608355                           29   5.7  
06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178     28   7.5  
04_01_0295 + 3926329-3926958                                           28   7.5  

>01_03_0289 -
           14725832-14726114,14726216-14726298,14726432-14726545,
           14727830-14728199,14728726-14728856,14728970-14729078,
           14729257-14729378,14729522-14729625,14729849-14729953,
           14730034-14730192,14730336-14730391,14730576-14730627,
           14730725-14731031
          Length = 664

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 343 ELHYKVLDTIFQNLHKKMKEIDPYYXXYSSTVHH 444
           ++ YK L+T++ + ++K K++D YY      V H
Sbjct: 42  QVSYKGLETLYDDGYQKAKDLDYYYRSLGELVEH 75


>12_02_0423 + 18944555-18945226,18945309-18945545
          Length = 302

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 146 HHNRSVRKNNQREKRKRASIETAGL 220
           HHN++V+    RE+R+R S +TA L
Sbjct: 158 HHNQAVQSAAARERRRRISSKTAEL 182


>05_01_0213 - 1606383-1606816,1607695-1608355
          Length = 364

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 573 TQTCRLCSTEN-GPSVPKPTDEGRSRLADQQNCLSVERRIQ 692
           T T   CS+E  GPS P PT E   RLA+ Q   S  R++Q
Sbjct: 200 TTTTSSCSSEEVGPSSPSPTSE-EIRLANNQQ--SSRRKLQ 237


>06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178
          Length = 518

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 729 FKPIQKFGG*QKIGFVFPQISSF-VDLPIDSVPHR*VLELRAHFQLNIAGMS 577
           FKP Q+F    +I F F  I S+ +   I   P+  VL+LR+ F L+   +S
Sbjct: 197 FKPQQRFNELSEICFHFVSIESYMLRNVITRCPNLRVLDLRSCFDLDAVAIS 248


>04_01_0295 + 3926329-3926958
          Length = 209

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +1

Query: 544 NRNESDIKFEPR--HAGYVQLKMGPQFQNL 627
           N  E   +F+PR  H   V++K GP  QN+
Sbjct: 142 NGKEEKFEFQPRTKHCSMVRIKYGPNLQNI 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,764,676
Number of Sequences: 37544
Number of extensions: 360769
Number of successful extensions: 811
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)