Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_C20
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    28   0.72 
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    27   1.3  
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    27   1.7  
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    27   1.7  
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    27   1.7  
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    27   1.7  
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    27   1.7  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    26   2.9  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   8.9  

>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 19/64 (29%), Positives = 25/64 (39%)
 Frame = +1

Query: 133 KPXEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGF 312
           K  EG ++++L+ NIGSG                                   SD+DMGF
Sbjct: 48  KALEGKDLKELLLNIGSGAGAAPVAGGAAAPAAADGEAPAEEKEEAKEEEE--SDEDMGF 105

Query: 313 GLFD 324
           GLFD
Sbjct: 106 GLFD 109



 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 84  KAAAVSVSPYWPGLFAKAL 140
           KAA V V P W  +FAKAL
Sbjct: 32  KAANVDVEPIWATIFAKAL 50


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 84  KAAAVSVSPYWPGLFAKAL 140
           KAA V V P W  +FAKAL
Sbjct: 32  KAANVDVEPIWATIFAKAL 50



 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 292 SDDDMGFGLFD 324
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 292 SDDDMGFGLFD 324
           SD+DMGFGLFD
Sbjct: 302 SDEDMGFGLFD 312


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 292 SDDDMGFGLFD 324
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 292 SDDDMGFGLFD 324
           SD+DMGFGLFD
Sbjct: 99  SDEDMGFGLFD 109



 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 84  KAAAVSVSPYWPGLFAKAL 140
           KA  V V P W  +FAKAL
Sbjct: 32  KAGNVEVEPIWATIFAKAL 50


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 292 SDDDMGFGLFD 324
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 292 SDDDMGFGLFD 324
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 173 LVIRSRTLMPSQGFGEQTWPIW 108
           L+  SRTL+  +   E+TWP W
Sbjct: 812 LICPSRTLIIDKACVEKTWPYW 833


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +1

Query: 13  CLLCSHPGGCXCCRNWXXNFH 75
           C  C  PG   CC     +FH
Sbjct: 266 CSACHGPGNFLCCETCPNSFH 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,210,623
Number of Sequences: 5004
Number of extensions: 16330
Number of successful extensions: 53
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)