Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_C20
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    36   0.017
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    32   0.21 
Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF016449-13|AAG24003.1|  350|Caenorhabditis elegans Serpentine r...    27   6.0  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 15/19 (78%), Positives = 15/19 (78%)
 Frame = +3

Query: 84  KAAAVSVSPYWPGLFAKAL 140
           KAA V   PYWPGLFAKAL
Sbjct: 33  KAANVEFEPYWPGLFAKAL 51



 Score = 31.9 bits (69), Expect = 0.28
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = +1

Query: 133 KPXEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGF 312
           K  EG++V++LIT++ SG                                   SDDDMGF
Sbjct: 49  KALEGVDVKNLITSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEE-SDDDMGF 107

Query: 313 GLFD 324
           GLFD
Sbjct: 108 GLFD 111



 Score = 31.1 bits (67), Expect = 0.49
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = +2

Query: 14 VYSALILVDAXVAVTGXQISTIL 82
          VY+ALIL D  VA+TG +I+T+L
Sbjct: 10 VYAALILQDDEVAITGEKIATLL 32


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 14/19 (73%), Positives = 14/19 (73%)
 Frame = +3

Query: 84  KAAAVSVSPYWPGLFAKAL 140
           KAA V   P WPGLFAKAL
Sbjct: 33  KAANVEFEPNWPGLFAKAL 51



 Score = 31.9 bits (69), Expect = 0.28
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = +1

Query: 133 KPXEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGF 312
           K  EG++V++LIT++ SG                                   SDDDMGF
Sbjct: 49  KALEGVDVKNLITSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEE-SDDDMGF 107

Query: 313 GLFD 324
           GLFD
Sbjct: 108 GLFD 111



 Score = 31.1 bits (67), Expect = 0.49
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = +2

Query: 14 VYSALILVDAXVAVTGXQISTIL 82
          VY+ALIL D  VA+TG +I+T+L
Sbjct: 10 VYAALILQDDEVAITGEKIATLL 32


>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 292 SDDDMGFGLFD 324
           SDDDMGFGLFD
Sbjct: 302 SDDDMGFGLFD 312


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 292 SDDDMGFGLFD 324
           SDDDMGFGLFD
Sbjct: 97  SDDDMGFGLFD 107


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 292 SDDDMGFGLFD 324
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


>AF016449-13|AAG24003.1|  350|Caenorhabditis elegans Serpentine
           receptor, class t protein8 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +2

Query: 86  SGGCICIAILA--RSVRQSLXKASM 154
           S GC+CIA LA  R++R S+ K S+
Sbjct: 281 SSGCMCIAYLAFNRTIRNSVLKISI 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,858,828
Number of Sequences: 27780
Number of extensions: 97701
Number of successful extensions: 254
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)