Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_C20
         (517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   1.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   10.0 

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = -3

Query: 398 SQFLIT*KLYNRQNGIF-----LFLHKAS*SKRPKPM 303
           S+ +++ +LY+RQNG+      L L K   + +P PM
Sbjct: 275 SKMMVSPRLYDRQNGLVLSRMNLTLAKMEKTSKPLPM 311


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +1

Query: 1   RPADCLLCSHPGGCXCCRNWXXNFHHLVKR 90
           R   C L   P    CCR+W   F    KR
Sbjct: 385 RMQHCELHMQPRKKNCCRSWLSKFPTRSKR 414


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +1

Query: 1   RPADCLLCSHPGGCXCCRNWXXNFHHLVKR 90
           R   C L   P    CCR+W   F    KR
Sbjct: 385 RMQHCELHMQPRKKNCCRSWLSKFPTRSKR 414


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 341 LHKAS*SKRPKP 306
           LH+AS SK P+P
Sbjct: 554 LHRASLSKTPQP 565


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,865
Number of Sequences: 438
Number of extensions: 1331
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)