Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_C17
         (305 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64849-3|AAC48050.2|  351|Caenorhabditis elegans Twik family of ...    25   7.9  
AC006619-2|AAK68254.1|  434|Caenorhabditis elegans Hypothetical ...    25   7.9  

>U64849-3|AAC48050.2|  351|Caenorhabditis elegans Twik family of
           potassium channelsprotein 10 protein.
          Length = 351

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -1

Query: 179 IYILIVFLVFSVCEGSLGLSILVSIIRSH 93
           +Y++I+F+VF V   ++ + ++ + I  H
Sbjct: 299 VYVIIIFIVFGVAIVTIAIDVVAANIIHH 327


>AC006619-2|AAK68254.1|  434|Caenorhabditis elegans Hypothetical
          protein C46C11.2 protein.
          Length = 434

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/18 (55%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
 Frame = -2

Query: 76 KDLE-YYNDKIFIYNNFY 26
          KDLE YYN K+ +++N+Y
Sbjct: 14 KDLEKYYNKKMVMWDNYY 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,678
Number of Sequences: 27780
Number of extensions: 23785
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)