Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_C16
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.80 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.7  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    21   9.9  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.9  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 502 PYGCSVVMGTWTDYEGPQMY 561
           P GC+VV+GT+  +  P +Y
Sbjct: 435 PAGCTVVIGTFKLHRQPHIY 454


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 658  GDLTVKELVREAAXIIYLVHDELKDKQFE 744
            GD T+ E V +    I   H E+ DKQ E
Sbjct: 1073 GDCTMAEDVYQTLKHIIQTHGEMTDKQVE 1101


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 353 SPATAMPTCSSIWNILLFAPGSYNFDVINFSTANT 249
           S  T+ P   S   I    PGS+NF +   +T +T
Sbjct: 286 SEHTSTPNFLSEAKIFPPTPGSFNFSMAALATEHT 320


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 613 KAKQAAKTEIEKLKL 657
           KAK+  + EIEKL+L
Sbjct: 63  KAKRLQEAEIEKLRL 77


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 357 YEPCDSHANMFINME 313
           Y P  SH+  ++NME
Sbjct: 268 YSPLTSHSLYYVNME 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,096
Number of Sequences: 438
Number of extensions: 4735
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)