Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_C15
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr...    44   2e-05
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    29   0.58 
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    29   1.0  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    27   2.3  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.1  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   5.4  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    26   7.1  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   7.1  

>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 178

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 23/67 (34%), Positives = 34/67 (50%)
 Frame = +1

Query: 154 CGXSVQXPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERYSGKGFTAK 333
           C   ++ PK+++H   + R      +C+DC   F   DY +H  C+TE +RY  KG    
Sbjct: 7   CQDIIKKPKLDQH---RSRCHGAYFTCIDCNTTFERTDYRNHTSCMTEAQRYQ-KGLYRP 62

Query: 334 EKKGEKK 354
            KK  KK
Sbjct: 63  TKKELKK 69


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 199 TKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERYSG 315
           T    K  NL   D +  FL K YE+ IK + EE++  G
Sbjct: 270 TVAHQKISNLPTTDLWSFFLDKRYETRIKKLKEEQKDQG 308


>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
 Frame = +1

Query: 283 KCITEEERYSGKGFTAKEKKGEKKQNAWVEM----LQSVLDEQKSAPQNVRRIIET-ISK 447
           K + + E+   K    KEK+ +K  +AW E      +++L  Q+   +N+++  E+  SK
Sbjct: 160 KKLKDNEQLLKKSIRRKEKEKKKSSDAWKERKDNEKKAMLMRQQRREENLKKRRESKKSK 219

Query: 448 HNNTPRKK 471
               P+KK
Sbjct: 220 KGKAPKKK 227


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 382 SVLDEQKSAPQNVRRIIETISKHNNTPRKKPKFINFVKNVC 504
           +VL     AP  +++ + +I +    P K PK ++ V+N+C
Sbjct: 268 TVLQFNPIAPTYMKKCLGSILRKEGVP-KSPKLLSLVENIC 307


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 491 SKMSVDIKLIQKTLTKLGNLFL 556
           S +S+DI LI KT + LGNL L
Sbjct: 309 SILSIDINLIGKTGSSLGNLIL 330


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 554 EINSQAWSMSFGLVLCPQTFLTKLIN 477
           +I   +W  +F L+LC  ++ TKLIN
Sbjct: 100 DITQLSWGYNFDLLLCASSY-TKLIN 124


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 540 SLVNVFWISFMSTDIFDKINKLRLLSW 460
           S++N+FW + + + IF+K     L  W
Sbjct: 426 SIINIFWSTALKSYIFEKFTNTILGFW 452


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 262 KDYESHIKCITEEERYSGKGFTAKEKK 342
           KD +   K + +   Y GKGFT   +K
Sbjct: 259 KDVDESAKALMKARTYPGKGFTLASRK 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,926,874
Number of Sequences: 5004
Number of extensions: 58961
Number of successful extensions: 179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)