Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_C15
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0484 - 22621614-22621676,22621798-22621911,22622006-226224...    53   3e-07
01_05_0485 - 22628999-22629325,22630340-22630450,22630888-226310...    31   0.79 
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757...    29   4.2  
06_03_0083 + 16374830-16374922,16375917-16375974,16377893-163780...    29   5.6  
10_08_0065 + 14596257-14597417                                         28   7.4  
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    28   9.8  

>01_05_0484 -
           22621614-22621676,22621798-22621911,22622006-22622453,
           22623052-22623179,22623747-22623821,22623954-22624040
          Length = 304

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 25/77 (32%), Positives = 40/77 (51%)
 Frame = +1

Query: 130 MVVFTCSHCGXSVQXPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERY 309
           MV F C  CG  ++ PK+  H+ +    +   LSC+DC + F  +  + H +CI+E E+Y
Sbjct: 1   MVWFQCEDCGDDLKKPKLAGHFRSCSAYR---LSCIDCGEFFTQETVQGHTQCISEAEKY 57

Query: 310 SGKGFTAKEKKGEKKQN 360
             KG        + KQ+
Sbjct: 58  GPKGQNKASNNAQGKQD 74


>01_05_0485 -
           22628999-22629325,22630340-22630450,22630888-22631034,
           22631283-22631337,22631761-22632134,22632926-22633000,
           22633419-22633670
          Length = 446

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 154 CGXSVQXPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERY 309
           C      PK     +   RN+   LSC+DC + F  +  + H +CI+  E+Y
Sbjct: 64  CNLRNTGPKSLLQLINMGRNQ---LSCIDCGESFSQETVQGHAQCISGAEKY 112


>02_05_0672 +
           30775458-30775523,30775594-30775662,30775748-30775797,
           30775869-30775929,30776016-30776381,30776542-30776754,
           30776826-30777056,30777502-30777615,30777703-30778495,
           30778535-30778905,30779007-30779378,30779448-30780438,
           30781068-30781141,30781953-30782030,30782448-30782525
          Length = 1308

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
 Frame = +2

Query: 341 RVRKNKMLGSRCCSQF*MSKKVHLKMYVG--LLRQ*ASITIH--HERSLSLLILSKMSVD 508
           +VR +KM+GS+C  +F M+  + L+      LL++ + I +   HERSL+  IL  M   
Sbjct: 326 QVRHDKMVGSKCSIKF-MTDGILLREVQSDFLLKRYSVIILDEAHERSLNTDILIGMLSR 384

Query: 509 IKLIQKTL 532
           I  I+K+L
Sbjct: 385 IIKIRKSL 392


>06_03_0083 +
           16374830-16374922,16375917-16375974,16377893-16378089,
           16378176-16378292,16378437-16378497,16378603-16378691,
           16378808-16378882,16378992-16379080,16379203-16379252,
           16379539-16379699,16380004-16380132,16380548-16380928
          Length = 499

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
 Frame = +2

Query: 89  FKTNRPNSHVFXKQWLFLHAVI-VGXLFXSPKWKSIISLNVGIKIQICHVWTVSKIF*EK 265
           F  NRP+  +F       HA   +   F    W SI+ + VGI +Q+   +    ++   
Sbjct: 312 FWFNRPDWVLFFIHLTLFHATPGLKKCFHENIWLSIVEVIVGISLQVLCSYITFPLY--A 369

Query: 266 IMNRISSALLK---KKDTLEKVSQLRRKRVRKNKM 361
           ++ ++ S + K   ++ T++ +   R+K + K K+
Sbjct: 370 LVTQMGSNMKKTIFEEQTMKALMNWRKKAMEKKKV 404


>10_08_0065 + 14596257-14597417
          Length = 386

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 33  KIVCHIKVSKNLKRXSILHSKQIAPIHTCF-XSNGCF 140
           K++C  K+SKN+   SI +   +A  H+C      CF
Sbjct: 283 KLICEDKLSKNIDTGSIANILLLAEKHSCHALKEACF 319


>01_05_0279 +
           20318440-20318688,20318785-20318931,20319449-20319611,
           20319770-20319887,20320607-20320676,20320774-20320854,
           20320924-20320959,20321129-20321149,20321586-20321642,
           20321716-20321827,20321905-20322178,20322454-20322556,
           20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
 Frame = +1

Query: 319 GFTAKEKKGEKKQNAWVEM---LQSVLDEQKSAPQ-NVRRIIETISK--HNNTPRKKPKF 480
           GFTAK KK  K   AW  +   LQ +    K+A +  +R  +  I K  H+ +P +  +F
Sbjct: 636 GFTAKMKKRIKHVKAWRRLALKLQDIKQRLKNADERKIRYDLSGIEKNGHSKSPEQSFQF 695

Query: 481 INFVKNVCGHKTNPKDIDQAW 543
               +++ G + N K++   W
Sbjct: 696 AR-EEDLVGIEIN-KELLMQW 714


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.131    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,551,078
Number of Sequences: 37544
Number of extensions: 328277
Number of successful extensions: 951
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)