Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_C15
         (792 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46787-8|CAA86746.1|  253|Caenorhabditis elegans Hypothetical pr...   113   1e-25
AF016683-7|AAM97999.1|  609|Caenorhabditis elegans Hypothetical ...    31   0.71 
AL132902-8|CAC14423.2|  699|Caenorhabditis elegans Hypothetical ...    29   5.0  
U28735-5|AAF99955.3|  279|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z81037-6|CAB02748.2|  414|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>Z46787-8|CAA86746.1|  253|Caenorhabditis elegans Hypothetical
           protein C16C10.8 protein.
          Length = 253

 Score =  113 bits (273), Expect = 1e-25
 Identities = 54/145 (37%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
 Frame = +1

Query: 130 MVVFTCSHCGXSVQXPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERY 309
           MV F+C++CG + +  +VE+H L +CRN     SC+DC   +  + Y+ H+KCITE ++Y
Sbjct: 1   MVFFSCNNCGEACKKNQVERH-LFQCRNTT--FSCIDCQLVYTRETYKDHVKCITENQKY 57

Query: 310 SGKGFTAKEKKGEKKQNAWVEMLQSVLDEQKSAPQNVRRIIETISKHNNTPRKKPKFINF 489
            GK +  KE KGE KQNAWV+ +   ++    +   V+ ++++++   N PRK+ KFINF
Sbjct: 58  GGKNYVEKENKGEAKQNAWVDQVNRAIEFVTDS--QVKELLKSVAGFANIPRKEAKFINF 115

Query: 490 VKNVCGHKTNPKDID-QAWEFISVK 561
           + N C  +   K++  +AW+ I+ +
Sbjct: 116 LTNSC--RLRDKNLALRAWQAIAAE 138


>AF016683-7|AAM97999.1|  609|Caenorhabditis elegans Hypothetical
           protein K09F6.9 protein.
          Length = 609

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = +1

Query: 247 KDFLGKDYESHIKCITEEERYSGKGFTAKEKKGEKKQNAWVEMLQSVLDEQKSAPQNVRR 426
           K+   K  E H+    + E ++ K  T K+++ EK  +   +  Q+  D+QK   +  ++
Sbjct: 150 KEEKNKQREKHLATHKKAEEFARKVRTDKDEQREKHLDTHKKAEQNAQDDQKYHDEARKK 209

Query: 427 IIETISKHNNTPRKK 471
            IET  K      K+
Sbjct: 210 YIETQKKAEENEEKR 224


>AL132902-8|CAC14423.2|  699|Caenorhabditis elegans Hypothetical
           protein Y71A12B.9 protein.
          Length = 699

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 148 SHCGXSVQXPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYESH 279
           S+ G  V+  ++ K +  +C N N +L C+ C +   G++   H
Sbjct: 37  SNRGKVVKNQEIIKTFCDECDNCNKSLMCLTCGRILCGRNDSGH 80


>U28735-5|AAF99955.3|  279|Caenorhabditis elegans Hypothetical
           protein F48E3.4 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = +2

Query: 143 HAVIVGXLFXSPKWKSIISLNVGIKIQICHVWTVSKIF*EKIMNRISSALLKKKDT 310
           H  +V  L    K K+I S   G  +    V T SK F +   N I+ A++KKKD+
Sbjct: 28  HQYLVKVLTKDTKLKNI-STCTGTLLSPSVVLTSSKCFPDTRKNLIAQAIIKKKDS 82


>Z81037-6|CAB02748.2|  414|Caenorhabditis elegans Hypothetical
           protein C17E4.10 protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
 Frame = +1

Query: 157 GXSVQXPKVEKHYLTKCRNKN-PNLSCMDCFKDFLGKDYESHIKCITEEERYSGKGFTAK 333
           G  +  P+ E+  L     K+ P LS    F DF  +  E       EE+  +    T +
Sbjct: 80  GAPIATPEDEEQLLDDLEIKSAPLLSPRRTFADFEDRSSEEKENRRIEEDDDTEADTTIR 139

Query: 334 EKKGEKKQNAWVEMLQSVLDEQKSAPQNVRRIIETISKHNNTPRKKPKFINFVKN 498
           E+   +K+       + VL E+K      +  +ET+ +H     + P FI  V++
Sbjct: 140 EEFDYEKE-------EEVLKEEKIID---KPNVETVEEHKENKNESPDFIRMVES 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.131    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,151,259
Number of Sequences: 27780
Number of extensions: 329969
Number of successful extensions: 1160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)