Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_C12
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0955 + 29168771-29170507                                         29   2.7  
07_03_0744 + 21121757-21122202,21122316-21122737,21122992-211231...    28   3.5  
03_02_0599 - 9730204-9730314,9730766-9731549,9731631-9732051,973...    28   4.7  
07_03_1792 + 29569623-29569737,29569848-29569981,29570117-295702...    27   6.2  
11_01_0450 - 3487464-3487844,3487883-3488268,3488883-3489033,348...    27   8.2  

>03_05_0955 + 29168771-29170507
          Length = 578

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 131 QQTVRRYHGESHFKPPTMDELPVPKGSWQSHHDANQR 241
           QQ  +R+H   H  PP   +   P    Q HH  +Q+
Sbjct: 26  QQQQQRHHHHHHLPPPPPPQSMAPHHHQQKHHHHHQQ 62


>07_03_0744 +
           21121757-21122202,21122316-21122737,21122992-21123117,
           21123198-21123319,21123413-21123623,21123955-21124192,
           21124284-21124431,21124547-21124879
          Length = 681

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 242 DVGWHHGATAMSLWALVIHPW 180
           DVGW + A A  L ALV H W
Sbjct: 163 DVGWFNAAVAKILAALVEHTW 183


>03_02_0599 -
           9730204-9730314,9730766-9731549,9731631-9732051,
           9732139-9732385,9733730-9733921,9734071-9734204,
           9734316-9734477,9736162-9736200,9737507-9737825
          Length = 802

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -3

Query: 267 PKRSTALKRRWLASWCDCHEPLGTGNSSMVGGLK*LSP 154
           P R   LK  W   W  CH   G+G+ S +   K   P
Sbjct: 199 PIRKNELKNLWQHVWRRCHSSSGSGSESGIRTQKCTKP 236


>07_03_1792 +
           29569623-29569737,29569848-29569981,29570117-29570284,
           29572817-29573003,29573098-29573422,29573591-29574368,
           29574897-29575022
          Length = 610

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 267 PKRSTALKRRWLASWCDCHEPLGTGNSS 184
           P R   LK  W   W  CH   G+G+ S
Sbjct: 64  PIRKNELKNLWQHVWRRCHSSSGSGSES 91


>11_01_0450 - 3487464-3487844,3487883-3488268,3488883-3489033,
            3489132-3491102,3492090-3492149,3492240-3492436,
            3492678-3492963
          Length = 1143

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 177  PPWMNYQCPKAHGSR 221
            PPW   + PKAHG+R
Sbjct: 1096 PPWSQEEDPKAHGAR 1110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,040,431
Number of Sequences: 37544
Number of extensions: 201414
Number of successful extensions: 523
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)