Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_C10
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 29 0.46
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 27 2.5
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 27 3.3
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 26 4.3
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 4.3
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 5.7
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 7.6
SPCC1393.14 |||nuclear telomere cap complex subunit Ten1|Schizos... 25 7.6
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch... 25 10.0
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 10.0
>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 29.5 bits (63), Expect = 0.46
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = -2
Query: 423 RLCER--DYRCQRIHQPMVCCYCCTN*HNCQ*NSPSHCSWLETCYHF 289
R CE+ +Y+C R H C C + C HC W + C F
Sbjct: 97 RFCEKCQEYKCDRSHH---CSQC----NKCILRMDHHCMWFKNCVGF 136
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = -2
Query: 309 LETCYHFS*TTLKSFQ-ICNYDYSV--SLIIKGYLS 211
+E C+HFS T L + + YD+ + S++ GYLS
Sbjct: 423 IEHCFHFSQTVLSGLRYLQRYDWLLLRSIVFFGYLS 458
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 304 LQPATMRWRILLTIVSVCTAIAAYHWLMDPL 396
LQ IL + VC A+AA H+L PL
Sbjct: 153 LQHRLTEGEILKILADVCDAVAAMHYLDPPL 183
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 300 MSPTSYNEMENSTDNCVSLYSNSSIPLVDGSS 395
MS S NE + N S Y N+S+P +D ++
Sbjct: 417 MSKLSLNEQPAAPSNSNSQYMNTSMPTLDSTN 448
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 303 SPTSYNEMENSTDNCVSLYSNSSIPLVDGSSDTCSLAHTVFVESSLF 443
S +S ++ T + +S S S P DGS D+ +AH + S F
Sbjct: 241 SHSSIGDLTTITQSSISSGSGSFKPSWDGSFDSSLMAHQSYGTSPAF 287
>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 274 ERRLTEVIACLQPATMRWRILLTIVSVCTAIAAYHWLMDPLTPV 405
+RRL I W LL +V VC + L+ P+ PV
Sbjct: 10 QRRLVREINKFSSFESNWLFLLFLVRVCRQLKTVTVLIVPVLPV 53
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 7.6
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +3
Query: 243 SSHNYRFESF*ASFN*SDSM---SPTSYNEMENSTDNCVSLYSNSSIPLVDGSSDTCSLA 413
+S+NY S +S S S S TS + + +S+ N + S +S L S+ + SLA
Sbjct: 61 TSYNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLA 120
Query: 414 HTVFVESSL 440
+ SSL
Sbjct: 121 SSSTTSSSL 129
>SPCC1393.14 |||nuclear telomere cap complex subunit
Ten1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 102
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +3
Query: 345 CVSLYSNSSIPLVDGSSD-TCSL 410
CV Y N + L+DGSS TC +
Sbjct: 26 CVQSYKNGILRLIDGSSSVTCDV 48
>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 213
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 484 GVHRKVVAPSIITARTRSILNDFNMSCDD 570
G+ R + + + A T SI+N F C D
Sbjct: 44 GIIRAITSQKLSDAATNSIINKFCTQCSD 72
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 312 SYNEMENSTDNCVSLYSNSSIPLVDG 389
SY S DNC+ L+S S LVDG
Sbjct: 1387 SYINDSFSVDNCLRLFSWSHSLLVDG 1412
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,218
Number of Sequences: 5004
Number of extensions: 47109
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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