Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_C10
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021571-5|CAA16513.2|  140|Caenorhabditis elegans Hypothetical ...    88   5e-18
AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical ...    88   6e-18
AF025468-7|AAB71044.1|  248|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z78542-3|CAB01745.2|  463|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z68493-8|CAA92795.1|  336|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AL021571-5|CAA16513.2|  140|Caenorhabditis elegans Hypothetical
           protein T19A6.3a protein.
          Length = 140

 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 47/122 (38%), Positives = 70/122 (57%), Gaps = 4/122 (3%)
 Frame = +1

Query: 259 DLKAFERRLTEVIACLQPATMRWRILLTIVSVCTAIAAYHWLMDP---LTPVVSLTQSLW 429
           DLK FE+RLTEVI  + P   RWRI + I +V   +    +  +    +  +  +   L 
Sbjct: 18  DLKFFEKRLTEVITYMGPTCTRWRIAIVIFAVLVGVIGSKYFANEKIEIFQIPMIDMFLT 77

Query: 430 NHPFFAVTSTLLVLLFMI-GVHRKVVAPSIITARTRSILNDFNMSCDDTGKLILKPRPAN 606
            H  F +   + +LLF + GVHR++VAP+I+  R R  L+ F++SCD  GKLI+KP   N
Sbjct: 78  THLDFTLCFFVGLLLFAVFGVHRRIVAPTIVARRCRDALSPFSLSCDHNGKLIVKPAVRN 137

Query: 607 SS 612
           S+
Sbjct: 138 SA 139


>AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical
           protein T19A6.3b protein.
          Length = 142

 Score = 87.8 bits (208), Expect = 6e-18
 Identities = 48/124 (38%), Positives = 70/124 (56%), Gaps = 6/124 (4%)
 Frame = +1

Query: 259 DLKAFERRLTEVIACLQPATMRWRILLTIVSVCTAIAAYHWLMDPLTPVV-----SLTQS 423
           DLK FE+RLTEVI  + P   RWRI + I +V   +    +  + L  +       +   
Sbjct: 18  DLKFFEKRLTEVITYMGPTCTRWRIAIVIFAVLVGVIGSKYFANELQKIEIFQIPMIDMF 77

Query: 424 LWNHPFFAVTSTLLVLLFMI-GVHRKVVAPSIITARTRSILNDFNMSCDDTGKLILKPRP 600
           L  H  F +   + +LLF + GVHR++VAP+I+  R R  L+ F++SCD  GKLI+KP  
Sbjct: 78  LTTHLDFTLCFFVGLLLFAVFGVHRRIVAPTIVARRCRDALSPFSLSCDHNGKLIVKPAV 137

Query: 601 ANSS 612
            NS+
Sbjct: 138 RNSA 141


>AF025468-7|AAB71044.1|  248|Caenorhabditis elegans Hypothetical
           protein T27A1.3 protein.
          Length = 248

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +1

Query: 7   VIRLCPAXELL---CFVNXXQLAFILHIIDLNLGLFV-CLSCLLY 129
           +IR C   +LL    ++    + FIL+ +DL  GL + CL C L+
Sbjct: 196 LIRKCHFLKLLGDDSYITTEDMKFILNYLDLKHGLLIRCLQCPLF 240


>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical
           protein C27H6.1 protein.
          Length = 1657

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 540 YGASARCDDARSHYLSMYSNHE*QNQ*CRGHSKKGMIPQ 424
           YGA A  D+++ +  S Y  +E     CR + ++   PQ
Sbjct: 491 YGAEAAADNSQEYDYSAYGGYEGYLAACRAYDEESQQPQ 529


>Z78542-3|CAB01745.2|  463|Caenorhabditis elegans Hypothetical
           protein F20D1.3 protein.
          Length = 463

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 519 DDARSHYLSMYSNHE*QNQ*CRGHSKKGM-IPQRLCERD 406
           D+ R H L++ S     +Q C G  ++GM IP++ C  D
Sbjct: 221 DNTRVHLLNLNSPQHITSQNCSGDPQRGMPIPRKQCGFD 259


>Z68493-8|CAA92795.1|  336|Caenorhabditis elegans Hypothetical
           protein C33A12.11 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +1

Query: 343 IVSVCTAIAAYHWLMDPLTPVVSLTQSLWNHPFFAVTSTLLVLLF 477
           I S C +IA  HWL   L   +  T      PF      +L++LF
Sbjct: 99  ISSFCASIAPNHWLKLILFLALYFTYLAMAFPFLVPVVPILIVLF 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,396,121
Number of Sequences: 27780
Number of extensions: 262971
Number of successful extensions: 752
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)