Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_C10
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    25   0.66 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   2.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   2.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.0  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    23   3.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   6.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   8.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.1  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 291 SDSMSPTSY-NEMENSTDNCVSLYSNSSIPLVDGSSDTCSLAHTVFVESSLFCCDLYIIG 467
           +D   P S  N  EN+T +  + Y+N     V+   DT  LA TVF   ++    + +IG
Sbjct: 155 NDKPIPASCCNSPENNTCSISNSYTNGC---VEALKDTVKLAGTVFGSVAIAIAIVELIG 211


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 129 YRFHIXSNNANLQNHLRFLMYNFV 200
           Y+++  +NN N  N+ + L YN +
Sbjct: 94  YKYNYNNNNYNNNNYNKKLYYNII 117


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 129 YRFHIXSNNANLQNHLRFLMYNFV 200
           Y+++  +NN N  N+ + L YN +
Sbjct: 94  YKYNYNNNNYNNNNYNKKLYYNII 117


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 561 RHVEVIKYGASARCDDARSHYLSMYSN 481
           RH+EVIK      CD   +++  M  N
Sbjct: 209 RHMEVIKIKNFDNCDQRINYHFGMTDN 235


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 294 DSMSPTSYNEMENSTDNCVSLYSNS 368
           D  +PT + EM+    N  SL S +
Sbjct: 27  DKRAPTGHQEMQGKEKNSASLNSEN 51


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 18  MSGXRASLFCKXXATCVYFAH 80
           ++G RASLFC        FAH
Sbjct: 229 INGRRASLFCGLQKYTRSFAH 249


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 18  MSGXRASLFCKXXATCVYFAH 80
           ++G RASLFC        FAH
Sbjct: 224 INGRRASLFCGLQKYTRSFAH 244


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 85  DLNLGLFVCLSCLLYIVFTL-XLIMQIFKITY 177
           DLN  L++   CL Y   T+  ++  +  I Y
Sbjct: 304 DLNEWLYILSGCLYYFSTTINPILYNLMSIKY 335


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -2

Query: 372 CCYCCTN 352
           CC+CC N
Sbjct: 12  CCWCCDN 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,311
Number of Sequences: 438
Number of extensions: 3004
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)