Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_C09
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   319   2e-88
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.93 
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    28   1.6  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   3.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.8  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    26   6.6  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  319 bits (784), Expect = 2e-88
 Identities = 157/222 (70%), Positives = 180/222 (81%)
 Frame = +1

Query: 43  AVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 222
           A   ISKKRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLG
Sbjct: 3   AAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLG 62

Query: 223 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 402
           EKGRRIRELT++VQKRF   E +VELYAEKV  RGLCA+AQ ESLRYKL+ GLAVRRA Y
Sbjct: 63  EKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAY 122

Query: 403 GVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQG 582
           GVLR++ME+GA+GCEVV+SGKLR  RAKSMKF DG MIHSG P  D++++ATRHVLLRQG
Sbjct: 123 GVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQG 182

Query: 583 VLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 708
           VLG+KVKIMLP   + K   KK  PD ++V +PK+E    +P
Sbjct: 183 VLGVKVKIMLP---EPKTRQKKSLPDIVVVLDPKEEEPITKP 221


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +1

Query: 640 PKKPQPDHILVTEPK--DEPVPLEPTXEVRSLAPAPLP 747
           P +P P+  L  EP   DEPVP EP      L   P+P
Sbjct: 110 PNEPVPEEPLPGEPPLPDEPVPEEPLPGEPPLPNEPVP 147


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 409  LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 564
            + F ME   +  + ++  +L+     S K  D ++I  GD  ND + T+ RH
Sbjct: 1868 IHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 193 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAI-AQAESLRYKL 369
           MATR Q       RR  E  + +QK +N  + ++EL  E+V   G   +  + +  RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWNRNKVNMEL--ERVRNEGTKLLQGKKQRRRYSI 783

Query: 370 IG 375
           +G
Sbjct: 784 LG 785


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 649 PQPDHILVTEPKDEPVPLEPTXEVRSLAPAPLP 747
           P P  ++V  P   P+P+ P   +    P P P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 682 KDEPVPLEPTXEVRSLA 732
           K+ PVPLEP  EV +LA
Sbjct: 563 KNNPVPLEPLVEVDALA 579


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,058,927
Number of Sequences: 5004
Number of extensions: 63060
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)