Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_C07
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    26   1.8  
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    25   4.1  

>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 72  AR*VCFAGSSQDCGFFGTGGRVNIXFYILTFNKCVFDDIQVEINDFEF 215
           AR V F   S++   F TG  + +   +L  N C+  DI  E N+F F
Sbjct: 213 ARAVIFLADSKNS--FITGTTLYVDGGLLAGNPCLIQDIYSENNNFVF 258


>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 209 KIIYFNLDVIKNTLVECQNVKXNVNSTTGS 120
           ++I+ +L V++  L ECQN+  +V+    S
Sbjct: 76  QVIHSHLPVLQKGLQECQNLNKSVSQNLKS 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 779,784
Number of Sequences: 5004
Number of extensions: 10826
Number of successful extensions: 29
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)