Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B24
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    28   1.3  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    27   2.3  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   5.3  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    26   5.3  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    26   5.3  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    26   7.0  
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   7.0  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    25   9.3  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    25   9.3  
SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|...    25   9.3  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   9.3  

>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
 Frame = +3

Query: 60  FSKQENFELNFPNMEVTDLSDILNVXSIKMETSDVS---FDETSAVSDPMSII-PQYVTE 227
           F+KQ + +++   +   D   +++      +T  V    +D  S +SD   ++ PQ V+ 
Sbjct: 84  FAKQSSQDISDDELIQHDSRKVISSPYSPKQTHTVLKRLYDRQSVISDHEKLLTPQNVSN 143

Query: 228 SDLGLMQTGNEMLPAPLAVFTDTPDDEDTLQSN-ESSEEIIV 350
           S   ++     +LP+ L+   DTP      + N E+  E++V
Sbjct: 144 SSQ-ILSPFTSLLPSTLSTLKDTPLSVSQNEKNLETVGEVLV 184


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/68 (25%), Positives = 29/68 (42%)
 Frame = +3

Query: 99  MEVTDLSDILNVXSIKMETSDVSFDETSAVSDPMSIIPQYVTESDLGLMQTGNEMLPAPL 278
           +E   L   +   S+  +TS + FD+      P  IIP    + D   ++   E + +P 
Sbjct: 27  VETNHLYPTITNLSLNSDTSSILFDKNKKPLKPKIIIPDKEFDLDY-YLKDETESIQSPF 85

Query: 279 AVFTDTPD 302
             FT  P+
Sbjct: 86  EGFTAQPN 93


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 17/56 (30%), Positives = 32/56 (57%)
 Frame = +3

Query: 36  TLCFLFLKFSKQENFELNFPNMEVTDLSDILNVXSIKMETSDVSFDETSAVSDPMS 203
           +LC LF KFS   NF+  F +  VT L+D +    I+ + + +S D+   +++ ++
Sbjct: 700 SLCKLFTKFS---NFDYLFEDRTVTFLTDFI----IRKQKAHLSADQCKQLANVLT 748


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -2

Query: 169 KLTSLVSILMXLTFNISLKSVTSMFGKLSSKFSCFENLRKRKQRVHFRVRRAAP 8
           +L SL++ ++   F+  LKS+  +F    S  S FE     +QRV       AP
Sbjct: 556 ELISLLAFILPHVFDYGLKSLDVIFTMKKSPESDFERALLSEQRVSRAKMMMAP 609


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 150 ETSDVSFDETSAVSDPMSIIPQYVTESDLGLMQTGNEMLPAPLAVFTDTPDDEDTLQ 320
           +T D    +   + D  SI+PQ V  S++ L +T  +    P A+    PD +  L+
Sbjct: 106 KTQDKQKKQQIQLRDQPSILPQEVLPSEVELERTYQDQQSVPDAISGFQPDMDPRLR 162


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 285 FTDTPDDEDTLQSNESSEEIIVQLMDIRTRLSRL 386
           FT +  D++++   ESSEE++  L ++ TRLS L
Sbjct: 429 FTKSEHDDNSI---ESSEELVQYLPELPTRLSFL 459


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/37 (27%), Positives = 15/37 (40%)
 Frame = -2

Query: 574 GFRTSSMFIFFSATLICMFTWTTPSPRIHCSTKVLWF 464
           GF T    + F   ++ +F W    P I     V W+
Sbjct: 57  GFLTIRTVVIFILRIVSLFLWILADPAILLVQSVYWY 93


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 216 YVTESDLG-LMQTGNEMLPAPLAVFTDTPDDEDTLQSNESSEEIIVQ 353
           ++T + LG ++  GN +L   LAV     +  DTL+ +   E +IV+
Sbjct: 353 HLTRTHLGGILNAGNTVLAYHLAVTNFNNEVYDTLREDSIPEVVIVK 399


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = +3

Query: 237 GLMQTGNEMLPAPLAVFTDTPDDEDTLQSNESSEEIIVQLMDIRTRLSRLRDMLERRLAT 416
           G  ++ N+ L   L   T+T +DE +  SN   E II  L D        ++ L+   A 
Sbjct: 16  GSRESSNDELKVLLRD-TETKEDEKSSFSNSEEESIIENLSDSSVNKEYAKNSLKLSDAV 74

Query: 417 DLSDY 431
             S Y
Sbjct: 75  SESKY 79


>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 273 PLAVFTDTPDDEDTLQSNESSEEIIVQLMDIRTRLSRLRDMLERRLATDLSDYTF 437
           PLA   D    E  L+S++   ++I         L RL    E+R + +  DYTF
Sbjct: 8   PLAASVDDESTERNLESHKKQAKLI---------LKRLSPTSEKRASIESGDYTF 53


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
 Frame = +3

Query: 39  LCFLFLKFSKQENFELNFPNMEVTDLSDILNVXSIKMETSDVSFDET-----SAVSDPMS 203
           LC  +L      N  L++P M+  DLS       +K + +    D T       +SD  S
Sbjct: 89  LCAAYLIVIDSRNTVLSYPLMKHRDLSKPAATYFLKQKVTCTVTDPTIDWVFFGMSDG-S 147

Query: 204 IIPQYVTESDLGLMQTGNEMLP 269
           ++P  VT   LG  +  N  +P
Sbjct: 148 VVPWDVTRHCLGKFKVPNLYVP 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,826
Number of Sequences: 5004
Number of extensions: 52802
Number of successful extensions: 169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)