Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_B24
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1073 - 34300089-34300235,34300783-34301031,34302509-343027... 34 0.11
03_05_0620 - 26196597-26196841,26196929-26197020,26197118-26197296 29 3.2
02_02_0374 + 9538478-9540385 29 3.2
04_04_0479 - 25524753-25525426,25525736-25525819,25526255-255264... 29 4.2
02_05_0932 - 32841331-32842242 29 5.5
12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,132... 28 7.3
11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141... 28 7.3
06_03_0072 - 16223152-16223987,16224394-16224981,16225941-16226268 28 7.3
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087... 28 7.3
03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235 28 9.7
>01_06_1073 -
34300089-34300235,34300783-34301031,34302509-34302780,
34303131-34303182,34303272-34303349,34303659-34303718,
34303801-34303875,34304382-34304585,34304694-34304767,
34304992-34305095,34305261-34305334,34305407-34305473,
34306024-34306127
Length = 519
Score = 34.3 bits (75), Expect = 0.11
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Frame = +3
Query: 156 SDVSFDETSAVSDPMSIIPQYVTESDLGLMQTGN-----EMLPAPLAVFTDTPDDEDTLQ 320
S+++ T V DP +++PQ + +L ++TGN E A + TDT D DT +
Sbjct: 146 SNITTTATVTVVDPQTLVPQKGAQLNLVTIRTGNVENWGESTIADTSPRTDTSTDPDTDE 205
Query: 321 SNESSEEIIVQLMDIRTRLSRLRDMLERR 407
N+ E+ + R +D L+ +
Sbjct: 206 RNQMFEQGQLAAPTASDSSDRSKDKLDHK 234
>03_05_0620 - 26196597-26196841,26196929-26197020,26197118-26197296
Length = 171
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/49 (38%), Positives = 22/49 (44%)
Frame = +2
Query: 365 QNATLPSTGHAREEAGDRSIGLHVLVAGR*NVGEPQDLSGAVYPGRRRR 511
+NA LPS G A D S V+V R P DLS A+ G R
Sbjct: 41 ENAVLPSRGSALAAGYDLSSAAEVVVPARGKAMVPTDLSIAIPEGTYAR 89
>02_02_0374 + 9538478-9540385
Length = 635
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -2
Query: 595 SWTTSSSGFRTSSMFI-FFSATLICMFTWTTPSPRIHCSTKVL 470
+WT + TS F+ FFS++++ W TP P CS + L
Sbjct: 200 TWTDAFKDDPTSVQFMDFFSSSMMANIKWNTPMP-TKCSVQCL 241
>04_04_0479 -
25524753-25525426,25525736-25525819,25526255-25526483,
25526910-25527357,25528462-25528569,25528681-25528806,
25528887-25528981,25529062-25529147,25529253-25529408,
25529523-25529766
Length = 749
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +2
Query: 359 GHQNATLPSTGHAREEAGDRSIGLHVLVAGR*NVGEPQDLSGAVYP-----GRRRRP 514
GH+ + PSTGHAR G+ + A R G + LS A P G RR+P
Sbjct: 316 GHRLSPPPSTGHARAIKGESEHTMLRAAASRCARGAIRRLSSAASPAAVAAGARRQP 372
>02_05_0932 - 32841331-32842242
Length = 303
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 467 PQDLSGAVYPGRRRRPSE 520
P D G+ PGRRRRPS+
Sbjct: 43 PADAEGSPVPGRRRRPSQ 60
>12_01_0179 -
1319291-1319332,1319884-1320579,1322759-1323207,
1323291-1324903,1324991-1325077,1326983-1327251
Length = 1051
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 156 SDVSFDETSAVSDPMSIIPQYVTESDLGLMQTGNEMLPAPLAVFTDTPDDEDTLQSNESS 335
S+ E+S + IIP L +QTG+ L + + T + DDED L+ ++S
Sbjct: 334 SESDLTESSPDASMTDIIPMLEELHPLIDLQTGHPSLVSRDNLNTSSDDDEDDLEEEDAS 393
Query: 336 EE 341
+
Sbjct: 394 TD 395
>11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,
1414639-1414725,1416244-1416411,1416785-1416958,
1417662-1417720,1418132-1420154,1420549-1420647,
1420998-1421796,1422101-1422120,1422446-1422513
Length = 1827
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 156 SDVSFDETSAVSDPMSIIPQYVTESDLGLMQTGNEMLPAPLAVFTDTPDDEDTLQSNESS 335
S+ E+S + IIP L +QTG+ L + + T + DDED L+ ++S
Sbjct: 1381 SESDLTESSPDASMTDIIPMLEELHPLIDLQTGHPSLVSRDNLNTSSDDDEDDLEEEDAS 1440
Query: 336 EE 341
+
Sbjct: 1441 TD 1442
>06_03_0072 - 16223152-16223987,16224394-16224981,16225941-16226268
Length = 583
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 595 SWTTSSSGFRTSSMFI-FFSATLICMFTWTTPSP 497
+WT + TS F+ FFS++++ W TP P
Sbjct: 239 TWTDAFKDVPTSVQFMDFFSSSMMANIKWNTPIP 272
>04_04_1229 -
31906854-31907300,31907986-31908181,31908631-31908756,
31909962-31910329,31910680-31910835,31910968-31911168,
31911230-31911375,31911439-31911865,31912527-31912627,
31913197-31913254
Length = 741
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 389 GHAREEAGDRSIGLHVLVAGR*NVGEPQDLSGAVYPGRRRR 511
G A +G S+G+ +L +G+ S AV PGR R+
Sbjct: 690 GWAAPASGGGSVGVGILTSGKPTAAAVAAFSSAVVPGRWRK 730
>03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235
Length = 1293
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 359 GHQNATLPSTGHAREEAGDRSIG 427
GH+ A P HAR AG R IG
Sbjct: 1221 GHEGAPCPRRPHARRVAGAREIG 1243
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,846,670
Number of Sequences: 37544
Number of extensions: 387135
Number of successful extensions: 1053
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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