Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B24
         (785 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13044-1|AAA65706.1|  454|Homo sapiens nuclear respiratory facto...    60   7e-09
D13318-1|BAA02575.1|  454|Homo sapiens transcription factor E4TF...    60   7e-09
BC035031-1|AAH35031.1|  454|Homo sapiens GA binding protein tran...    60   7e-09
AK223164-1|BAD96884.1|  454|Homo sapiens GA binding protein tran...    60   7e-09
AK123294-1|BAC85575.1|  210|Homo sapiens ne.  protein.                 31   6.2  

>U13044-1|AAA65706.1|  454|Homo sapiens nuclear respiratory factor-2
           subunit alpha protein.
          Length = 454

 Score = 60.5 bits (140), Expect = 7e-09
 Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 11/172 (6%)
 Frame = +3

Query: 303 DEDTLQSNESSEEIIVQLMDIRTRLSRLRDMLERRLATDLSDYTFWLQDAKMLENHKTLV 482
           +E  ++   +  E + Q +DI   +  L+ +LE RL   L  +   LQD + L+  ++L 
Sbjct: 24  EESIVEQTYAPAECVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQ-LDPERSLF 82

Query: 483 EQCIRGEGVVQVNIQI---KVAEKKINILDVLKPDE--EVVQLPRRHAXXXXXXXXXXXE 647
           +Q ++ +G VQ+++Q+   +  E K+NIL+++KP +  EVV  P  H            +
Sbjct: 83  DQGVKTDGTVQLSVQVISYQGIEPKLNILEIVKPADTVEVVIDPDAHHAESEAHLVEEAQ 142

Query: 648 ----EQGECXXXXXXXXXXXXVKWV--VDAQFKSDHRIRIPDDPADWSVXHV 785
               +  +              +W   ++   K   R+ IP DP  WS   V
Sbjct: 143 VITLDGTKHITTISDETSEQVTRWAAALEGYRKEQERLGIPYDPIQWSTDQV 194


>D13318-1|BAA02575.1|  454|Homo sapiens transcription factor
           E4TF1-60 protein.
          Length = 454

 Score = 60.5 bits (140), Expect = 7e-09
 Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 11/172 (6%)
 Frame = +3

Query: 303 DEDTLQSNESSEEIIVQLMDIRTRLSRLRDMLERRLATDLSDYTFWLQDAKMLENHKTLV 482
           +E  ++   +  E + Q +DI   +  L+ +LE RL   L  +   LQD + L+  ++L 
Sbjct: 24  EESIVEQTYAPAECVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQ-LDPERSLF 82

Query: 483 EQCIRGEGVVQVNIQI---KVAEKKINILDVLKPDE--EVVQLPRRHAXXXXXXXXXXXE 647
           +Q ++ +G VQ+++Q+   +  E K+NIL+++KP +  EVV  P  H            +
Sbjct: 83  DQGVKTDGTVQLSVQVISYQGIEPKLNILEIVKPADTVEVVIDPDAHHAESEAHLVEEAQ 142

Query: 648 ----EQGECXXXXXXXXXXXXVKWV--VDAQFKSDHRIRIPDDPADWSVXHV 785
               +  +              +W   ++   K   R+ IP DP  WS   V
Sbjct: 143 VITLDGTKHITTISDETSEQVTRWAAALEGYRKEQERLGIPYDPIQWSTDQV 194


>BC035031-1|AAH35031.1|  454|Homo sapiens GA binding protein
           transcription factor, alpha subunit 60kDa protein.
          Length = 454

 Score = 60.5 bits (140), Expect = 7e-09
 Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 11/172 (6%)
 Frame = +3

Query: 303 DEDTLQSNESSEEIIVQLMDIRTRLSRLRDMLERRLATDLSDYTFWLQDAKMLENHKTLV 482
           +E  ++   +  E + Q +DI   +  L+ +LE RL   L  +   LQD + L+  ++L 
Sbjct: 24  EESIVEQTYAPAECVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQ-LDPERSLF 82

Query: 483 EQCIRGEGVVQVNIQI---KVAEKKINILDVLKPDE--EVVQLPRRHAXXXXXXXXXXXE 647
           +Q ++ +G VQ+++Q+   +  E K+NIL+++KP +  EVV  P  H            +
Sbjct: 83  DQGVKTDGTVQLSVQVISYQGIEPKLNILEIVKPADTVEVVIDPDAHHAESEAHLVEEAQ 142

Query: 648 ----EQGECXXXXXXXXXXXXVKWV--VDAQFKSDHRIRIPDDPADWSVXHV 785
               +  +              +W   ++   K   R+ IP DP  WS   V
Sbjct: 143 VITLDGTKHITTISDETSEQVTRWAAALEGYRKEQERLGIPYDPIQWSTDQV 194


>AK223164-1|BAD96884.1|  454|Homo sapiens GA binding protein
           transcription factor, alpha subunit (60kD) variant
           protein.
          Length = 454

 Score = 60.5 bits (140), Expect = 7e-09
 Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 11/172 (6%)
 Frame = +3

Query: 303 DEDTLQSNESSEEIIVQLMDIRTRLSRLRDMLERRLATDLSDYTFWLQDAKMLENHKTLV 482
           +E  ++   +  E + Q +DI   +  L+ +LE RL   L  +   LQD + L+  ++L 
Sbjct: 24  EESIVEQTYAPAECVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQ-LDPERSLF 82

Query: 483 EQCIRGEGVVQVNIQI---KVAEKKINILDVLKPDE--EVVQLPRRHAXXXXXXXXXXXE 647
           +Q ++ +G VQ+++Q+   +  E K+NIL+++KP +  EVV  P  H            +
Sbjct: 83  DQGVKTDGTVQLSVQVISYQGIEPKLNILEIVKPADTVEVVIDPDAHHAESEAHLVEEAQ 142

Query: 648 ----EQGECXXXXXXXXXXXXVKWV--VDAQFKSDHRIRIPDDPADWSVXHV 785
               +  +              +W   ++   K   R+ IP DP  WS   V
Sbjct: 143 VITLDGTKHITTISDETSEQVTRWAAALEGYRKEQERLGIPYDPIQWSTDQV 194


>AK123294-1|BAC85575.1|  210|Homo sapiens ne.  protein.
          Length = 210

 Score = 30.7 bits (66), Expect = 6.2
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 389 GHAREEAGDRSIGLHVLVAGR*NVGEPQ-DLSGAVYPGRRRRPS 517
           GH         +GLH+  AGR N+  P   L G   P R+RRPS
Sbjct: 159 GHIGANGWSLDLGLHICSAGR-NIPSPALYLGGWPRPSRQRRPS 201


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,440,072
Number of Sequences: 237096
Number of extensions: 2036883
Number of successful extensions: 4828
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4824
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)