Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B24
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.6  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 501 RPGYTAPLRSCGSPTF*RPATKTCSPIDLSPAS 403
           RP Y    RS GS    R   +TC+ ++L   S
Sbjct: 370 RPQYQIDKRSMGSHHGQRVMVRTCNGLELRDPS 402


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 727 RAITASGYPTTRLTGRC 777
           RA T  G PT  L GRC
Sbjct: 541 RASTEFGIPTGTLYGRC 557


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 49  FSLNFQNKKILNLIFQTW 102
           FSL F+NKK+   + + W
Sbjct: 546 FSLKFKNKKLPVFLAEIW 563


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,717
Number of Sequences: 438
Number of extensions: 3644
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)