Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B23
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    27   1.9  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   5.9  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   7.7  

>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 1   GV*VALPRPIEPKPTSPDTRCTLPISERG 87
           G  +++P+P+ PKP+  ++   LP S+ G
Sbjct: 530 GAVISIPKPLTPKPSDSNSLYPLPHSKVG 558


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 406 NY*DQLDFNQIYST*IIIT 350
           N  DQ DF Q+YST + IT
Sbjct: 201 NVDDQRDFEQVYSTDVAIT 219


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 34  PKPTSPDTRCTLPISERGSGGDALEPSYRSP 126
           PK    +T  TLP+ +     D LE  +R+P
Sbjct: 557 PKVNKEETEPTLPVCDSEKENDDLECYFRTP 587


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,975,293
Number of Sequences: 5004
Number of extensions: 37258
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)