Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B23
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0284 + 16249497-16249993,16250950-16251069,16251166-162512...    29   2.0  
08_01_0265 + 2148255-2150219,2150735-2150812                           29   3.4  
04_01_0363 + 4754650-4755912                                           29   3.4  
02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356     28   4.5  
01_01_0978 + 7738232-7740848,7740929-7741320                           28   4.5  
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138...    28   4.5  
09_04_0330 + 16731390-16731699,16731774-16732080,16732182-167335...    28   6.0  
01_01_0082 + 625198-625719                                             28   6.0  
02_02_0521 - 11156594-11156956,11157097-11157483,11158327-111583...    27   7.9  

>07_03_0284 +
           16249497-16249993,16250950-16251069,16251166-16251298,
           16251867-16252031,16253289-16253459
          Length = 361

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = +1

Query: 25  PIEPKPTSPDTRCTLPISERGSGGDALEPSYRSPTYILGES 147
           P+ P PTSPD R     S  G GG  L P  R     LG +
Sbjct: 18  PLLPSPTSPDRR-----SGGGGGGGRLLPGLRGAARFLGRT 53


>08_01_0265 + 2148255-2150219,2150735-2150812
          Length = 680

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 19  PRPIEPKPTSPDTRCTLPISERGSGGDALEPSYRSP 126
           P    PK TS  T  +   S   +GG+AL+P  R P
Sbjct: 17  PHAFLPKATSTSTSTSSSSSSAAAGGEALKPRPRLP 52


>04_01_0363 + 4754650-4755912
          Length = 420

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 38  SQPLLTRGAPCRLANEALAETHWNRRTGHR 127
           +Q     GAP   A E   E  W RRTG+R
Sbjct: 93  AQTAAADGAPAATATEGDGERGWRRRTGNR 122


>02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356
          Length = 444

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -3

Query: 415 SKNNY*DQLDFNQIYST*IIITLVFNPNENINGTCNPFPE 296
           SKN    +L   QIY    I  L+ +P+   +GTC+PFP+
Sbjct: 211 SKNAETGELQSYQIYPESPIGRLI-SPSSACSGTCSPFPD 249


>01_01_0978 + 7738232-7740848,7740929-7741320
          Length = 1002

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 78  ANRQGAPRVRRGWLWLNRS 22
           AN QG PR R G+ W+ RS
Sbjct: 618 ANSQGGPRSRAGFAWMMRS 636


>01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,
            1387228-1387571,1387641-1387905,1387998-1388075,
            1388207-1388260,1389341-1389361,1389453-1389578,
            1389696-1389863,1389923-1390313,1390629-1390710,
            1391175-1391536,1391806-1392630,1392956-1393476
          Length = 1227

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +1

Query: 19   PRPIEPKPTSPDTRCTLPISERGSG-GDALEPSYRSPTYILGESS 150
            P P+ P+P +P T    PI+    G      P   S T++ G SS
Sbjct: 935  PGPVPPRPRAPSTGVVRPIAVSSHGTAPPRGPRLPSGTFVGGSSS 979


>09_04_0330 +
           16731390-16731699,16731774-16732080,16732182-16733561,
           16734064-16734112
          Length = 681

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +1

Query: 82  RGSGGDALEPSYRSPTYILGESSQYIKVPVLRCKS---PLILLRLKFIKLNNLV 234
           R S G AL PSYR   ++LG     + VP L C S   P+++ + + I  + L+
Sbjct: 243 RPSYGVAL-PSYRQSLHVLGSMPLCVLVPHLSCFSQELPMVVTKYQAISGHKLL 295


>01_01_0082 + 625198-625719
          Length = 173

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 19  PRPIE-PKPTSPDTRCTLPISERGSGGDALEPSYRSPT 129
           P P+  P PT+P T C  P    G GG    PSY +PT
Sbjct: 78  PPPVAYPPPTTPSTNC--PPPPYGGGGYNPTPSY-NPT 112


>02_02_0521 -
           11156594-11156956,11157097-11157483,11158327-11158383,
           11159671-11159970
          Length = 368

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 16  LPRPIEPKPTSPDTRCTLPISERGSGGDA 102
           LPRPI  KP+S      + +   GSGG A
Sbjct: 31  LPRPILVKPSSAAAAVNVVVVSAGSGGGA 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,407,061
Number of Sequences: 37544
Number of extensions: 237135
Number of successful extensions: 689
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)