Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B23
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97015-4|AAB52342.1|  245|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical ...    29   2.3  
AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical ...    28   5.4  
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical...    27   9.4  

>U97015-4|AAB52342.1|  245|Caenorhabditis elegans Hypothetical
           protein F48C1.6 protein.
          Length = 245

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = +1

Query: 13  ALPRPIEPKPTSPDTRCTLPISERGSGGDALEPSYRSPTYILGESSQYIKVPVLRCKSPL 192
           A  R   PKP S D   ++P S   S  D    SY++    +GE+S++ + P  R  SP 
Sbjct: 156 AAQRVENPKPNSYDYTYSVPSSGDNSSYDGSFSSYKTE---IGETSEFQQSPRARRPSPP 212

Query: 193 I 195
           I
Sbjct: 213 I 213


>AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical
            protein R155.3 protein.
          Length = 1165

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = +1

Query: 19   PRPI--EPKPTSPDTRCTLPISERGSG---GDALEPSY 117
            P PI  EPKPT  +T+    + +RG     G ALEP+Y
Sbjct: 1121 PTPIAPEPKPTPAETKPKDRLEQRGMAKVDGPALEPAY 1158


>AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical
           protein ZK973.2 protein.
          Length = 865

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/26 (34%), Positives = 20/26 (76%)
 Frame = -1

Query: 114 RRFQCVSARASFANRQGAPRVRRGWL 37
           +RF+ V+ +A+ AN++G P+ ++ W+
Sbjct: 104 KRFEDVTNKATVANKKGRPKKQQTWI 129


>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
           protein Y59A8B.1a protein.
          Length = 1641

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +1

Query: 16  LPRPIEPKPTSPDTRCTLPISERGSGGDALEP 111
           LP P  PKP  PD R   PI  R   G  + P
Sbjct: 202 LPPP-PPKPPMPDLRTKEPIGIRSWNGSGIPP 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,843,356
Number of Sequences: 27780
Number of extensions: 206804
Number of successful extensions: 485
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)