Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B19
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    28   1.8  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    27   4.1  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    26   5.4  
SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        26   7.1  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   9.4  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    25   9.4  

>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 587 IVWVLCILNSNTPYGLISVRTCFPMCLESQPTTGYRMYLYQ 709
           IV  L +L + T    I++  CF       PT G R  LYQ
Sbjct: 101 IVLCLVLLKNKTVISPITLLQCFFPLFRENPTRGVRELLYQ 141


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 228 ASSGLANILRVIRASAVRTVSDNNLRANIAECTIY-ACTTGLFNVNDT 88
           ASSG   I+ +  ASA+ T+SD +    + E   +    T ++N  D+
Sbjct: 388 ASSGHVLIIPIAHASALSTLSDTSYEKTLNEMNRFRKAVTDMYNACDS 435


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 26/88 (29%), Positives = 43/88 (48%)
 Frame = +2

Query: 383 LFRLFTVFRILHTIVYAVIPLPQPSRAIAFGIPYIIMLYMGIQVILYYVTAL*RLLVKIL 562
           +F+ F V+R LH+I++A I   Q S++ A+   + I               L  L + + 
Sbjct: 410 IFQAF-VWRFLHSIIHAFILFYQ-SKSKAW-TKHFIRNGESAAYAWSQWKGLYNLTLNMS 466

Query: 563 TVTFLHLFIVWVLCILNSNTPYGLISVR 646
            ++F+     W L  L SN  YGL+S+R
Sbjct: 467 YISFV--MAAWKLYHLPSNWTYGLVSLR 492


>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 122

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 538 VKTFSENTYCDLPA 579
           +  F++NTYC+LPA
Sbjct: 63  ISLFNKNTYCELPA 76


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 568 DLPAFIYCLGFVHTKFEYTIWSDICKNLFS 657
           DLP   YC+GF  T  EYT+ + I  +L S
Sbjct: 897 DLP--FYCIGFKSTAPEYTLRTRIWASLRS 924


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 312 FSKSFKWARRILSTTGSSYLTFPPLSIFA-SSGLANIL 202
           F+K F+  + I   + +SY     +SIFA +SGL NI+
Sbjct: 211 FTKFFRIFKFIAGLSVASYFVLLGMSIFAETSGLNNIM 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,338,282
Number of Sequences: 5004
Number of extensions: 71837
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)