Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B19
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   7.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   7.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   7.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   7.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   7.5  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   10.0 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   10.0 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   10.0 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   10.0 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   10.0 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   10.0 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   10.0 
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   10.0 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   10.0 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   10.0 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   10.0 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   10.0 
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   10.0 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   10.0 

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -1

Query: 636 IRPYGVFEFSMHKTQTINKCRKVTVSIFTKSLYSAV 529
           I P G   F   + Q I KC    +S     LY+A+
Sbjct: 648 IEPPGTRFFYPDRKQVILKCNIQDMSFLFSQLYNAL 683


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 303 IWRIFPHFGYSERFM*LLDRQQHSQRFFSDCLP 401
           IW +  +  +   F+ ++  Q  S R F+ C+P
Sbjct: 7   IWTLAVNVLFVNSFLFVIAAQDSSGRIFTICVP 39


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 303 IWRIFPHFGYSERFM*LLDRQQHSQRFFSDCLP 401
           IW +  +  +   F+ ++  Q  S R F+ C+P
Sbjct: 7   IWTLAVNVLFVNSFLFVIAAQDSSGRIFTICVP 39


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 303 IWRIFPHFGYSERFM*LLDRQQHSQRFFSDCLP 401
           IW +  +  +   F+ ++  Q  S R F+ C+P
Sbjct: 7   IWTLAVNVLFVNSFLFVIAAQDSSGRIFTICVP 39


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -1

Query: 636 IRPYGVFEFSMHKTQTINKCRKVTVSIFTKSLYSAV 529
           I P G   F   + Q I KC    +S     LY+A+
Sbjct: 738 IEPPGTRFFYPDRKQVILKCNIQDMSFLFSQLYNAL 773


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 341 FYVTTGPAATFATLLFRLFTVFRILHTIVYAVIPLPQP 454
           F++   P+ATF+  L ++ +VF   +T   AVIP+  P
Sbjct: 135 FFIYVHPSATFSLDLNKVVSVF---YT---AVIPMLNP 166


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 581 LFIVWVLCILNSNTPYGLISVRT 649
           LF+ W+ C+L  + P   I+ +T
Sbjct: 298 LFLQWLPCLLRMSRPGKKITKKT 320


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 581 LFIVWVLCILNSNTPYGLISVRT 649
           LF+ W+ C+L  + P   I+ +T
Sbjct: 298 LFLQWLPCLLRMSRPGKKITKKT 320


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 581 LFIVWVLCILNSNTPYGLISVRT 649
           LF+ W+ C+L  + P   I+ +T
Sbjct: 298 LFLQWLPCLLRMSRPGKKITKKT 320


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 581 LFIVWVLCILNSNTPYGLISVRT 649
           LF+ W+ C+L  + P   I+ +T
Sbjct: 298 LFLQWLPCLLRMSRPGKKITKKT 320


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 581 LFIVWVLCILNSNTPYGLISVRT 649
           LF+ W+ C+L  + P   I+ +T
Sbjct: 298 LFLQWLPCLLRMSRPGKKITKKT 320


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 581 LFIVWVLCILNSNTPYGLISVRT 649
           LF+ W+ C+L  + P   I+ +T
Sbjct: 298 LFLQWLPCLLRMSRPGKKITKKT 320


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 493 AVHGYPSNPVLCHSTVKTFSE 555
           ++ GYP NP L  +  K   E
Sbjct: 113 SLEGYPFNPCLTEAQYKEMEE 133


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 212 ANPEDAKMLRGGKVKYDDPVVERIRRAHLNDLENIP 319
           A+P+    ++    K  + V+E I++AH  +LE  P
Sbjct: 155 ADPQTYLEIQKXIKKAKEDVIEVIQKAHNMELEPTP 190


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 581 LFIVWVLCILNSNTPYGLISVRT 649
           LF+ W+ C+L  + P   I+ +T
Sbjct: 366 LFLQWLPCLLRMSRPGKKITKKT 388


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 581 LFIVWVLCILNSNTPYGLISVRT 649
           LF+ W+ C+L  + P   I+ +T
Sbjct: 366 LFLQWLPCLLRMSRPGKKITKKT 388


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
 Frame = +1

Query: 517 PVLCHSTVKTFSENTYCDLPAFIYCL------GFVHTKFEYTIWSDICKNLFSNVPRVAT 678
           P+ CH+T  +F E     LP+    L      G     F   +  D  K++  NVP+ +T
Sbjct: 657 PISCHTTPDSFIEAPNKTLPSLPSTLTKNSKQGLFSKLFAKKVKKD--KDIILNVPKEST 714


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 493 AVHGYPSNPVLCHSTVKTFSE 555
           ++ GYP NP L  +  K   E
Sbjct: 129 SLEGYPFNPCLTEAQYKEMEE 149


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 439 NNSVNDGVQNTEH 401
           NN+ ND +QNT +
Sbjct: 416 NNNQNDNIQNTNN 428


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,573
Number of Sequences: 438
Number of extensions: 5091
Number of successful extensions: 24
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)