Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B17
         (387 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0US64 Cluster: Predicted protein; n=1; Phaeosphaeria n...    31   5.8  
UniRef50_Q4YV50 Cluster: Replication factor A-related protein, p...    31   7.7  

>UniRef50_Q0US64 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 233

 Score = 31.5 bits (68), Expect = 5.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 198 YIHQVSSISAIQCKYRNTKPSKMTQHLILDG 106
           Y H   S +AI+  YRNTKP  + + L+ +G
Sbjct: 146 YYHDHISTTAIETLYRNTKPGDLLRELLSEG 176


>UniRef50_Q4YV50 Cluster: Replication factor A-related protein,
           putative; n=6; Plasmodium|Rep: Replication factor
           A-related protein, putative - Plasmodium berghei
          Length = 514

 Score = 31.1 bits (67), Expect = 7.7
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 223 FNNLSYK--YLYSSGQLDICNPV*IQKYKTVKDDTTFNFRRNGKV 95
           FNN+  K  Y++S G++ I NP    KY TVK      F  + ++
Sbjct: 95  FNNIELKKVYIFSKGRVSIANP----KYNTVKHKYELTFNEDSEI 135


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,502,592
Number of Sequences: 1657284
Number of extensions: 3145474
Number of successful extensions: 8726
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8724
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 15718494179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)