Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_B17
(387 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb... 26 1.8
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 25 3.1
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2... 25 3.1
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 25 5.5
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 5.5
SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces p... 25 5.5
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c... 24 7.2
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 24 7.2
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 24 9.6
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 24 9.6
>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 26.2 bits (55), Expect = 1.8
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 86 FAADLPVPSKIKCCVIFDGFVF-LYLHWIADI 178
FA LPVP K C F F+ L +W+ D+
Sbjct: 31 FAPALPVPINDKVCHFFVFFLLTLVFYWVFDL 62
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 3.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 148 YKTVKDDTTFNFRRNGKVRCERLLTFLQATARVGFGDDTAPD 23
++T D +F + G++R RL+TF GFG PD
Sbjct: 237 FETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278
>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 3.1
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -3
Query: 235 RNRNFNNLSYKYLYSSGQLDICNPV*IQKYKTVKDDTTFNFRRNGK 98
RN+ + + L SS DIC + Y DD F F +N K
Sbjct: 122 RNQFYIRFCLELLSSSQLSDICIKDFVTSYLVPYDDVRFFFYKNSK 167
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = -3
Query: 232 NRNFNNLSYKYLYSSGQLDICNPV*IQKYKTVKDDTTFN 116
N+ +N+S+ Y+Y + + D N ++K++ +D +T N
Sbjct: 202 NKALSNISFNYVYYTLENDSENINEVKKFEDEEDTSTPN 240
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 24.6 bits (51), Expect = 5.5
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -1
Query: 201 IYIHQVSSISAIQCKYRNTKPSKMTQHLILDGTGR 97
I + Q ++I+A+ +YR +K T +ILD G+
Sbjct: 156 IEMKQFTNIAAV-LRYRGVHSAKKTAFIILDNKGK 189
>SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 189 QVSSISAIQCKYRNTKPSKMTQHLILDGTGRSAAN 85
+++ +S Q YR PS+ +Q LI G G + +
Sbjct: 31 ELAGLSVSQAVYREYPPSQYSQVLICCGPGNNGGD 65
>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 24.2 bits (50), Expect = 7.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 94 RCERLLTFLQATARVGFG 41
RCERLL +L A+ V +G
Sbjct: 109 RCERLLPYLVASNPVNYG 126
>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 266
Score = 24.2 bits (50), Expect = 7.2
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 205 KYLYSSG-QLDICNPV*IQKYKTVKDDTTFNFRRNGKV 95
KYL G Q D+ K K +K ++ FN+ RNG+V
Sbjct: 97 KYLNEGGKQGDVGITKPHTKTKKLKSNSIFNYVRNGEV 134
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 23.8 bits (49), Expect = 9.6
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 189 QVSSISAIQCKYRNTKPSKMTQHLILDGTGRSAANDF*HFYKRRL 55
++ +S+ + +T P+K + +LD SAA D H K +L
Sbjct: 444 KIQEVSSNKRLIPSTPPTKKPINAVLDAAKNSAAKDL-HLAKMKL 487
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 23.8 bits (49), Expect = 9.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 9 PADTSSGAVSSPKPTRAVACKNVKSRSQRTF 101
P T + + SSP+PT K S +Q TF
Sbjct: 450 PMSTETSSSSSPQPTEERKAKFKPSFTQGTF 480
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 826,205
Number of Sequences: 5004
Number of extensions: 13587
Number of successful extensions: 40
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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