Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B17
         (387 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0475 + 9724676-9724936,9725518-9726216,9726273-9726596,972...    26   9.1  
05_05_0239 - 23543592-23544293,23544482-23544634,23544737-235449...    26   9.1  
02_02_0106 + 6814391-6817007,6817086-6817462                           26   9.1  

>09_02_0475 +
           9724676-9724936,9725518-9726216,9726273-9726596,
           9726900-9727847
          Length = 743

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 110 SKIKCCVIFDGFVFLYLHWIADIE 181
           S   C ++ DG ++   HW+ D++
Sbjct: 228 SSSSCLIVLDGLLYANEHWLPDLK 251


>05_05_0239 -
          23543592-23544293,23544482-23544634,23544737-23544922,
          23544951-23545097,23545274-23545411,23545527-23545727
          Length = 508

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 6  RPADTSSGAVSSPKPTR 56
          +P DTSS A++SP+ TR
Sbjct: 25 QPGDTSSPAIASPRATR 41


>02_02_0106 + 6814391-6817007,6817086-6817462
          Length = 997

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 15  DTSSGAVSSPKPTRAVACKNVKSRSQRTFPFRLKL-NVVSSLTVL 146
           D S   +SSP PT    C N+K        F  KL N ++SL  L
Sbjct: 102 DVSYNNISSPFPTMLYNCSNLKYLDLSNNAFAGKLPNDINSLPAL 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,178,774
Number of Sequences: 37544
Number of extensions: 82059
Number of successful extensions: 218
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)