Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B17
         (387 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY223815-1|AAP41103.1| 3997|Homo sapiens Cohen syndrome 1 protei...    29   4.0  
AY223814-1|AAP41102.1| 4022|Homo sapiens Cohen syndrome 1 protei...    29   4.0  
AJ608773-1|CAE75585.1| 3997|Homo sapiens VPS13B-2A protein protein.    29   4.0  
AJ608772-1|CAE75584.1| 4022|Homo sapiens VPS13B-1A protein protein.    29   4.0  
AB011104-1|BAA25458.1| 1637|Homo sapiens KIAA0532 protein protein.     29   4.0  

>AY223815-1|AAP41103.1| 3997|Homo sapiens Cohen syndrome 1 protein
            splice variant 1 protein.
          Length = 3997

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 220  NNLSYKYLYSSGQLDICNPV*IQKYKTVKDDTTFNFRRNGK 98
            NN  Y+  Y   QL +CNP   ++Y  V D  TF+    G+
Sbjct: 3088 NNTPYQIFYKP-QLSVCNPHSGKEYFRVPDSATFSICPGGE 3127


>AY223814-1|AAP41102.1| 4022|Homo sapiens Cohen syndrome 1 protein
            protein.
          Length = 4022

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 220  NNLSYKYLYSSGQLDICNPV*IQKYKTVKDDTTFNFRRNGK 98
            NN  Y+  Y   QL +CNP   ++Y  V D  TF+    G+
Sbjct: 3113 NNTPYQIFYKP-QLSVCNPHSGKEYFRVPDSATFSICPGGE 3152


>AJ608773-1|CAE75585.1| 3997|Homo sapiens VPS13B-2A protein protein.
          Length = 3997

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 220  NNLSYKYLYSSGQLDICNPV*IQKYKTVKDDTTFNFRRNGK 98
            NN  Y+  Y   QL +CNP   ++Y  V D  TF+    G+
Sbjct: 3088 NNTPYQIFYKP-QLSVCNPHSGKEYFRVPDSATFSICPGGE 3127


>AJ608772-1|CAE75584.1| 4022|Homo sapiens VPS13B-1A protein protein.
          Length = 4022

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 220  NNLSYKYLYSSGQLDICNPV*IQKYKTVKDDTTFNFRRNGK 98
            NN  Y+  Y   QL +CNP   ++Y  V D  TF+    G+
Sbjct: 3113 NNTPYQIFYKP-QLSVCNPHSGKEYFRVPDSATFSICPGGE 3152


>AB011104-1|BAA25458.1| 1637|Homo sapiens KIAA0532 protein protein.
          Length = 1637

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 220 NNLSYKYLYSSGQLDICNPV*IQKYKTVKDDTTFNFRRNGK 98
           NN  Y+  Y   QL +CNP   ++Y  V D  TF+    G+
Sbjct: 728 NNTPYQIFYKP-QLSVCNPHSGKEYFRVPDSATFSICPGGE 767


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,444,478
Number of Sequences: 237096
Number of extensions: 427257
Number of successful extensions: 801
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2641190740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)