Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B17
         (387 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AF003150-1|AAB54215.1|  997|Caenorhabditis elegans Hypothetical ...    26   8.1  

>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 133 DDTTFNFRRNGKVRCERLLT 74
           D   FNFRR G+  C +LLT
Sbjct: 276 DANGFNFRRTGRFSCMQLLT 295


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 133 DDTTFNFRRNGKVRCERLLT 74
           D   FNFRR G+  C +LLT
Sbjct: 276 DANGFNFRRTGRFSCMQLLT 295


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 133 DDTTFNFRRNGKVRCERLLT 74
           D   FNFRR G+  C +LLT
Sbjct: 276 DANGFNFRRTGRFSCMQLLT 295


>AF003150-1|AAB54215.1|  997|Caenorhabditis elegans Hypothetical
           protein T05E7.3 protein.
          Length = 997

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -3

Query: 241 NLRNRNFNNLSYKYLYSSGQLDICNPV*IQKYKTVKDDTTFNFRRNGKVRCERLLTFLQA 62
           NL+  +  N S K+L+   ++       + KY+   DD  F +  +   RCE LL  L  
Sbjct: 309 NLKKISMCNRSLKWLFLHSKISQKTSRPLNKYRLPSDDQLFQWLLHVS-RCEILLLNLYT 367

Query: 61  T 59
           T
Sbjct: 368 T 368


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,599,802
Number of Sequences: 27780
Number of extensions: 76410
Number of successful extensions: 271
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)