Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B17
         (387 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   0.92 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   2.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   2.8  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   2.8  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   2.8  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   2.8  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   2.8  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   2.8  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   4.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   4.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   6.5  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.4 bits (48), Expect = 0.92
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 232 NRNFNNLSYKYLYSS 188
           N N+NN +YKY Y++
Sbjct: 321 NYNYNNNNYKYNYNN 335


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 232 NRNFNNLSYKYLY 194
           N N+NN +YK LY
Sbjct: 88  NYNYNNNNYKKLY 100


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 232 NRNFNNLSYKYLY 194
           N N+NN +YK LY
Sbjct: 88  NYNYNNNNYKKLY 100


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 232 NRNFNNLSYKYLY 194
           N N+NN +YK LY
Sbjct: 88  NYNYNNNNYKKLY 100


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 241 NLRNRNFNNLSYKYL 197
           N  N N+NN +YK L
Sbjct: 96  NYNNNNYNNNNYKKL 110


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 241 NLRNRNFNNLSYKYL 197
           N  N N+NN +YK L
Sbjct: 96  NYNNNNYNNNNYKKL 110


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 241 NLRNRNFNNLSYKYL 197
           N  N N+NN +YK L
Sbjct: 96  NYNNNNYNNNNYKKL 110


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 241 NLRNRNFNNLSYKYL 197
           N  N N+NN +YK L
Sbjct: 96  NYNNNNYNNNNYKKL 110


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 241 NLRNRNFNNLSYKYLY 194
           N  N  +NN +YK LY
Sbjct: 312 NYSNNYYNNNNYKKLY 327


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 241 NLRNRNFNNLSYKYLYSSGQLDI 173
           N  N N+NN + K  Y +  ++I
Sbjct: 332 NYNNNNYNNYNKKLYYKNYIINI 354


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 241 NLRNRNFNNLSYKYLYSS 188
           N  N N+NN +Y   Y++
Sbjct: 332 NYNNNNYNNNNYNNNYNN 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,686
Number of Sequences: 438
Number of extensions: 1032
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)