Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B16
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr...    33   0.061
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    27   2.3  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    27   4.0  

>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 178

 Score = 32.7 bits (71), Expect = 0.061
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -3

Query: 490 PKEDAYRSMC--APILCCSCHPS-GNADHRSHTRCLGDLQR 377
           PK D +RS C  A   C  C+ +    D+R+HT C+ + QR
Sbjct: 14  PKLDQHRSRCHGAYFTCIDCNTTFERTDYRNHTSCMTEAQR 54


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 406 HTRCLGDLQRCKVDGSLSSPLPKCTWGLSMPLN 308
           HT+ L +L+    D S+S P  + +WG+ +P N
Sbjct: 214 HTQVLEELKTGISDLSISRPKQRLSWGIPVPGN 246


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +1

Query: 604 KLLSPIVKNLTAIENFNSTLQL 669
           K++SP +KNL A   FNSTLQ+
Sbjct: 204 KVISPGLKNLGATCFFNSTLQV 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,236,674
Number of Sequences: 5004
Number of extensions: 68006
Number of successful extensions: 181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)