Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B15
         (846 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2FVW2 Cluster: Putative uncharacterized protein; n=6; ...    36   0.97 
UniRef50_Q11UK9 Cluster: Sensor protein; n=1; Cytophaga hutchins...    33   9.0  

>UniRef50_A2FVW2 Cluster: Putative uncharacterized protein; n=6;
           Eukaryota|Rep: Putative uncharacterized protein -
           Trichomonas vaginalis G3
          Length = 2241

 Score = 36.3 bits (80), Expect = 0.97
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +3

Query: 669 YKTNLKQICIFCNSMSFNTYCVLSIEM*YQELHLVPQYNKHEILNKY 809
           Y  N K+I IF     FN   +  IE+   E HL+P +NK  + NK+
Sbjct: 315 YCFNSKKISIFTIGNKFNVNFIREIELFQSETHLLPPFNKKLLSNKW 361


>UniRef50_Q11UK9 Cluster: Sensor protein; n=1; Cytophaga
           hutchinsonii ATCC 33406|Rep: Sensor protein - Cytophaga
           hutchinsonii (strain ATCC 33406 / NCIMB 9469)
          Length = 656

 Score = 33.1 bits (72), Expect = 9.0
 Identities = 22/69 (31%), Positives = 32/69 (46%)
 Frame = -2

Query: 497 NVGLITFKQIQFVIKLSFRSHFYMSGFFFTNIM*SYINEFFYNQFNLGLFYGCVRFPQKT 318
           N+ L   +  QF I+L   S FY     +T    ++ + FF    + GLFYG + F    
Sbjct: 148 NIELKAHQTKQFYIRLKNESSFYYEFAVYTPE--NFASSFFNEYLSFGLFYGFMAFVLIY 205

Query: 317 NPFQHIRLK 291
           N F +  LK
Sbjct: 206 NIFYYSILK 214


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 736,635,633
Number of Sequences: 1657284
Number of extensions: 13991073
Number of successful extensions: 28082
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28058
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 74193458591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)