Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B15
         (846 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0117 + 941334-941339,941720-941906,942444-942565,942648-94...    28   8.1  

>08_01_0117 +
           941334-941339,941720-941906,942444-942565,942648-942656,
           942965-943067,943204-943247,943487-943516,943615-943737,
           943816-943841,943934-944015,944137-944178,944259-944292,
           944424-944451,944779-945022,945023-945124,945318-945443,
           945533-945715,945803-945961
          Length = 549

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 254 KSIKKTLYVCVNILSVYAEKDLFSGGNEHSHKISL 358
           K+I K+L V  N+++       FSG N+H  K++L
Sbjct: 310 KTINKSLSVLGNVVNALTTGIDFSGENKHQQKVTL 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,776,569
Number of Sequences: 37544
Number of extensions: 342199
Number of successful extensions: 553
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)