Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B15
         (846 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88170-9|AAB42243.2|  348|Caenorhabditis elegans Serpentine rece...    29   5.5  
Z68003-3|CAA91977.1|  849|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine re...    28   7.3  
AL032644-6|CAA21671.1|  574|Caenorhabditis elegans Hypothetical ...    28   9.6  

>U88170-9|AAB42243.2|  348|Caenorhabditis elegans Serpentine
           receptor, class h protein51 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 333 FPPENKSFSAYTLKIFTHTYKVFLILFCIDLPPPLNNS 220
           F P N +FS  +L I+  +Y+VF+I   + + P +  S
Sbjct: 301 FIPANSAFSTISLLIYNKSYRVFIIGTLLKILPKVEIS 338


>Z68003-3|CAA91977.1|  849|Caenorhabditis elegans Hypothetical
           protein E02H4.4 protein.
          Length = 849

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +2

Query: 233 GGGKSM----QKSIKKTLYVCVNILSVYAEKDLFSGGNEHSHKISL 358
           GGG+S+    +K +   L VC++  S   E +   GGN   H+ S+
Sbjct: 800 GGGESVVPHGRKRVVLRLLVCLSCNSEQKESNFIRGGNSPEHRFSV 845


>AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein77 protein.
          Length = 324

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 537 HVSCFLSYFFYFIQFYFLSPICCNSGNVKYYLLLF 641
           H+   +S+    I  YFL       GN KYYLLLF
Sbjct: 17  HLIGLVSFILNSIGIYFLIFNTNRLGNFKYYLLLF 51


>AL032644-6|CAA21671.1|  574|Caenorhabditis elegans Hypothetical
           protein Y51H1A.6 protein.
          Length = 574

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 341 CVRFPQKTNPFQHIRLKYLHIHIKF 267
           C  F QKT+ ++ IR+KY   HI +
Sbjct: 362 CTAFVQKTHGYECIRVKYCDQHIHY 386


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,817,753
Number of Sequences: 27780
Number of extensions: 367242
Number of successful extensions: 757
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)