Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B15
         (846 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   3.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   8.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   8.2  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3

Query: 387 DIRLHYICKKETAHIKMTSKRQLYNKLNLFKGN 485
           D  L  +   +++ I +   +Q+Y +LN ++GN
Sbjct: 482 DYSLPMVNHSKSSRINIERMKQVYQQLNKYRGN 514


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/46 (21%), Positives = 22/46 (47%)
 Frame = -1

Query: 336 SFPPENKSFSAYTLKIFTHTYKVFLILFCIDLPPPLNNSRIFIRVL 199
           S+PP+N+S       + T    + ++LF   +     N+ + + V+
Sbjct: 26  SYPPQNRSQEEDLWNLATDRAGLAILLFLFSVATVFGNTLVILAVV 71


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 588 LSPICCNSGNVKYYL 632
           + P  CN+G  KYYL
Sbjct: 402 VDPAGCNAGPAKYYL 416


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 669 YKTNLKQICIFCNSMSFNTYCVLSIEM*YQELHLVPQYNKHE 794
           Y T+  +I IF  ++   +YC+  I + Y    +V     HE
Sbjct: 201 YLTDTNEIRIFVATIFTFSYCIPMILIIYYYSQIVSHVVNHE 242


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
          protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 97 VLRWFLTQFLNAHCSVLTD 41
          ++RW L  +L   C  +TD
Sbjct: 1  MIRWLLLMYLGITCQGVTD 19


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 507 ITSV*RIRGKHVSCFLS 557
           +T + R RG HVSC  S
Sbjct: 108 LTQIRRDRGLHVSCSFS 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,925
Number of Sequences: 438
Number of extensions: 4431
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)