Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_B13
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 31 0.24
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 28 1.7
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 27 3.9
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 26 6.8
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 26 6.8
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 26 6.8
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 25 9.0
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 9.0
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 30.7 bits (66), Expect = 0.24
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +1
Query: 307 STLQSIYTRNRTLQTLSGSKLRLCQLTAITDGRTLSRGKSFTRNATMQQSTHILIDALML 486
S S+ T + L L+ S+L QL I L RGK S +D L+L
Sbjct: 428 SDFLSVMTIHIHLLYLASSRLYNWQLRVIYSLLQLFRGKKRNVLRNRIDSYEYDLDQLLL 487
Query: 487 LSIYYAIFRF-LQTIYLFHAKLSVS 558
+I + + F L TIY+F+A +++
Sbjct: 488 GTILFTVLIFFLPTIYVFYAAFALT 512
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 27.9 bits (59), Expect = 1.7
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Frame = +3
Query: 15 VRDRSLFRYTSIPTSVTMSLNPNFFP----NGYQDPKHPEEEVVSNWPYRTTPLVLPGAK 182
VRD S YT I + +++ PN P NG K P E S W + LP
Sbjct: 873 VRDASQTSYTLIDIAGSVAGKPNLIPHLPANGVDKIKQPSSE-RSKWWFDDG---LPAKS 928
Query: 183 VRREPGP 203
+ PGP
Sbjct: 929 IAAPPGP 935
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 26.6 bits (56), Expect = 3.9
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 10/109 (9%)
Frame = +3
Query: 93 NGYQDPKHP----EEEVVSNWPYRTT-PLVLPGAKVRREPGPTESYLRHHPNPAMRAPPN 257
NG++D + EVV N+ PL + ++ E R P P ++A N
Sbjct: 402 NGFEDQQQQLLGNSNEVVENYDVNPPLPLNPLPSNTQQSESTYEYSARQLPKPPVQAWQN 461
Query: 258 HDYRDTLMKQKVL-----HKQFNSPINLYSEQNIANSIRQQTSPLPTNG 389
+ Q+ + + N+P SEQ+ S+ Q+ P NG
Sbjct: 462 ENLSSNNKPQEYVGVENDYNFSNNPPTAMSEQSFHPSVSQKPMDTPENG 510
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 6.8
Identities = 23/86 (26%), Positives = 32/86 (37%)
Frame = -1
Query: 302 LVQHLLFHKGITVVVVRRCPHCWVGVMTQVTLCGARLPSDLSSREHERSGAVRPVADNFF 123
L+ HL + + + RCP V V+ L + L S G + A NF
Sbjct: 76 LLSHLSLCQNLIEFLTARCPRLVV-VLPWTVL---QELDGLKSESSSTCGYLARQAHNFL 131
Query: 122 FRMFRILVSVREEVGVERHCYTCRYG 45
+ FR VS V HC + G
Sbjct: 132 LQCFRSNVSSLRGQKVHEHCSSTEKG 157
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 9 R*VRDRSLFRYTSIPTSVTMSLNPNFFPN 95
R ++DR + + + VT LNP F P+
Sbjct: 726 RVMKDRKVCEHNQLMAEVTRQLNPRFHPS 754
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.8 bits (54), Expect = 6.8
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +3
Query: 48 IPTSVTMSLNPNFFPN-GYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRH 224
IP SV S NF Q+P + S P P+ +V ++P P + +
Sbjct: 159 IPPSVEASSGQNFNQGIASQNPAISTSNLPSTTPLYIPPVNYGANQVSQQPNPQLPGVSN 218
Query: 225 HPNPAMRAPP 254
+ NP+ + P
Sbjct: 219 YYNPSATSKP 228
>SPAC3A12.17c |cys12|cys1b|cysteine synthase
Cys12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 9.0
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 162 LVLPGAKVRR-EPGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVLHKQFNSPINLYSEQ 338
L L GA V+R P P H N A R NH +++ + QF +P N +
Sbjct: 147 LELLGAHVQRVTPAPIVDP-NHFVNTARRNAANHTVDESIPGKGYFANQFENPANWQAHF 205
Query: 339 N 341
N
Sbjct: 206 N 206
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +3
Query: 144 PYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVLHKQ 305
P PL P ++ R+P P S P+ APP H R+ + + H +
Sbjct: 44 PVSKKPLPPPTRRLPRKPLPFRSTSLQPPSSQPPAPPTHQ-REASPVKNIEHSE 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,437
Number of Sequences: 5004
Number of extensions: 61646
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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