Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B12
         (726 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            25   3.2  
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    24   5.5  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    23   7.3  

>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +1

Query: 391  EMSVCYNA---VDRHVVNGRGEQFALVHDSPLTDTVRKISYNEL 513
            E  V Y+A   V  H   GR  Q  +V+D P T  VR+I Y+E+
Sbjct: 1690 EFLVMYDARVKVTYHNRMGRPVQ-VVVYDDPRTVRVREIIYDEI 1732


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 583 SAPGPPYSLPTLSAFQPDARPDLLAHCKRFS*PCQ 479
           S+P P    P    F P + PD  +H + FS P Q
Sbjct: 47  SSPQPAMYYPHPHVFHPQSSPDWSSH-ENFSTPPQ 80


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 13/58 (22%), Positives = 25/58 (43%)
 Frame = +1

Query: 187 SIEDFFLKMGNSTDVCGTTPEYEKAQQRSLNDPEGFWGEVGSELEWTKPWDRVLDDSN 360
           ++ + F ++G +    GTTP + + ++ S+ D       +   L W       L D N
Sbjct: 137 AVLESFARLGVTLGNAGTTPTFNRNKRTSIVDITFCSTTLSERLNWRVSDALTLSDHN 194


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 773,397
Number of Sequences: 2352
Number of extensions: 16331
Number of successful extensions: 54
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74012934
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)