Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_B11
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 42 8e-05
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 41 2e-04
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom... 40 3e-04
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 38 0.001
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 37 0.003
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 37 0.004
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 35 0.015
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 34 0.020
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 31 0.19
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.3
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 27 2.3
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 27 3.1
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 26 5.4
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 26 5.4
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 26 5.4
SPAC105.02c |||ankyrin repeat protein, unknown biological role|S... 25 9.4
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 9.4
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 42.3 bits (95), Expect = 8e-05
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 368 DKHGNTALHLAVMLGRKECVQLLLAHSAPVKVKN-LAGWSPLAEAISYGDRQTISTLV 538
D NTALH AV R ECV++LL A ++ L W+PL A + G + +S LV
Sbjct: 364 DASSNTALHTAVRYNRPECVKMLLKLGANPSARDFLNSWTPLMLASATGLSEIVSILV 421
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 41.1 bits (92), Expect = 2e-04
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = +2
Query: 356 VTRKDKHGNTALHLAVMLGRKECVQLLLAHSAPVKVKNLAGWSPLAEAISYGDRQTISTL 535
+ +KD G T LH A +G+ + V+ L++ AP+ + G++PL A++ G L
Sbjct: 134 IRKKDLQGQTPLHRAAAVGKIQVVKYLISQRAPLNTSDSYGFTPLHFALAEGHPDVGVEL 193
Query: 536 VRKLKQQAREQME 574
VR R+ E
Sbjct: 194 VRAGADTLRKDSE 206
Score = 35.5 bits (78), Expect = 0.009
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +2
Query: 329 LSSLLRNNEV--TRKDKHGNTALHLAVMLGRKECVQLLLAHSAP--VKVKNLAGWSPLAE 496
+ L+ ++V T + G T LH A GR VQ LL AP ++ K+L G +PL
Sbjct: 89 IEELINRSDVDPTITTRGGQTCLHYAAGKGRLSIVQ-LLCDKAPELIRKKDLQGQTPLHR 147
Query: 497 AISYGDRQTISTLV 538
A + G Q + L+
Sbjct: 148 AAAVGKIQVVKYLI 161
>SPBP16F5.05c |||ribosome biogenesis protein
Nop8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +2
Query: 311 IGDVRKLSSLLRNNEVTRKDKHGNTALHLAVMLGRKECVQLLLAHSAPVKVKNLAGWSPL 490
I V+K+ L + +++ GNTA+H A + G E +LLL +KN+ SP+
Sbjct: 49 IAVVQKIIPYLNKEVINAQNESGNTAMHWAALNGHAEICKLLLEAGGDPHIKNIYEKSPI 108
Query: 491 AEA 499
EA
Sbjct: 109 YEA 111
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 353 EVTRKDKHGNTALHLAVMLGRKECVQLLLAH 445
E++R+D++GN+ LH+A G VQ ++ +
Sbjct: 28 ELSRRDENGNSGLHMASANGHIAVVQKIIPY 58
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +2
Query: 350 NEVTRKDKHGNTALHLAVMLGRKECVQLLLAHSAPVKVKNLAGWS 484
N + +DK+G+TAL++A +G K V++L+ A + N AG S
Sbjct: 475 NYLNHQDKNGDTALNIAARIGNKNIVEVLMQAGASAYIPNRAGLS 519
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +2
Query: 299 ECIFIGDVRKLSSLLRNNEVTRKDKHGNTALHLAVMLGRKECVQLLLAH 445
+C + V+ + S+ + +V DK+ NT LHLA M GR++ V+ LL H
Sbjct: 64 QCANVQMVKHILSVF-DVDVNAYDKNKNTPLHLAAMAGRQDIVEALLLH 111
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 36.7 bits (81), Expect = 0.004
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Frame = +2
Query: 356 VTRKDKHGNTALHLAVMLGRKECVQLLLAHSA-PVKVKN-LAGWSPLAEAISYGDRQTIS 529
+ +KD++G T LH+AV + V+ LL H V V++ +G++ L AI G+ + S
Sbjct: 45 INQKDRYGRTVLHIAVSENKNSFVRSLLQHKGIDVFVQDEESGYTALHRAIYVGNLEAAS 104
Query: 530 TLVRK 544
L+ K
Sbjct: 105 LLLSK 109
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 34.7 bits (76), Expect = 0.015
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +2
Query: 368 DKHGNTALHLAVMLGRKECVQLLLAHSAPVKVKNLAGWSPLAEAISYGDRQTISTLVRKL 547
D G+T+LH A +G E ++LLL +A + V N +PL ++ + + T + L
Sbjct: 245 DDDGHTSLHWACSMGHIEMIKLLLRANADIGVCNRLSQTPLMRSVIFTNNYDCQTFGQVL 304
Query: 548 K 550
+
Sbjct: 305 E 305
Score = 29.5 bits (63), Expect = 0.57
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 356 VTRKDKHGNTALHLAVMLGRKECVQLLLAHSAPVKVKN 469
V +D +G+T+L +A G +CV LL+++A + N
Sbjct: 362 VNLQDSNGDTSLLIAARNGAMDCVNSLLSYNANPSIPN 399
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 34.3 bits (75), Expect = 0.020
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 356 VTRKDKHGNTALHLAVMLGRKECVQLLLAHSAPVKVKNLAGWSP 487
+ +D HG+TAL + G K+C +LLL+ A + N G P
Sbjct: 351 INLQDDHGDTALLICARNGAKKCARLLLSFYASSSIPNNQGQYP 394
Score = 29.5 bits (63), Expect = 0.57
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 368 DKHGNTALHLAVMLGRKECVQLLLAHSAPVKVKNLAGWSPLAEAISYGDRQTIST--LVR 541
D+ G+TALH A +G E + LL A V N + L + + + T +V
Sbjct: 234 DEDGHTALHWAAAMGNLEMMHALLQAGANVVAVNYLQQTSLMRCVMFTMNYDLQTFEVVS 293
Query: 542 KLKQQA 559
+L Q A
Sbjct: 294 ELLQSA 299
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 31.1 bits (67), Expect = 0.19
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +2
Query: 290 PLHECIFIGDVRKLSSLLRNN-EVTRKDKHGNTALHLAVMLGRKECVQLLLAHSAPVKVK 466
P+H G V+ + L+++ + KDK G LHLAV V LL V ++
Sbjct: 71 PIHWAAKRGSVKTVHYLVQHGADPLLKDKQGFNCLHLAVHAASPLLVVYLLHLDISVDLR 130
Query: 467 NLAGWSPLAEAISYGDRQTISTLVR 541
+ +PL A +G+ + L+R
Sbjct: 131 DDQQHTPLMWASYHGNEPITNCLLR 155
Score = 26.6 bits (56), Expect = 4.0
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +2
Query: 314 GDVRKLSSLLRNN--EVTRKDKHGNTALHLAVMLGRKECVQLLLAHSAPVK-VKNLAGWS 484
G++ + +L+ + +V D+ G TALH A + + + LL H A V + +
Sbjct: 11 GELDTVKNLISSEKIDVNATDEGGATALHWAALNQQIPICKFLLEHGADVNAIGGDLQAA 70
Query: 485 PLAEAISYGDRQTISTLVR 541
P+ A G +T+ LV+
Sbjct: 71 PIHWAAKRGSVKTVHYLVQ 89
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 27.5 bits (58), Expect = 2.3
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -3
Query: 447 LCANNNCTHSLRPNITARCKAVFPCLSLRVTSLFLSNEDSLRTSPIKIHSC 295
L +NN TH L+ +C A FP L LFLS E++L T H C
Sbjct: 579 LACDNNGTHVLQ-----KCIAKFPPEKLE--PLFLSMEENLITLATNRHGC 622
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 499 DKLWGSSDYIHFGT*TQATGSRTNGNQKA*SDTSS 603
D ++GS+D + FG T T+ N K SD SS
Sbjct: 194 DAIYGSTDLLLFGVKKFITSMNTSSNVKISSDPSS 228
>SPAC1783.04c |hst4||Sir2 family histone deacetylase
Hst4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 631 FHIEVLNL*ESSYQIRPSDFHLFSSLLLE 545
FH + L S RP+DFHLF S L +
Sbjct: 115 FHAMIRKLHMLSNNARPTDFHLFLSQLAQ 143
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -2
Query: 421 LFTSQHNSKVQSCVPMFVLTGHLIIS 344
+FT + ++K SC+ F ++GHL++S
Sbjct: 259 IFTWKGHTKGISCLRFFPISGHLLLS 284
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/35 (31%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = -3
Query: 780 DISPLSHLMSEKSTKVVSNLIF--DPDLKILQTSD 682
D +P SH++++K+ + SN+ +PD +++TS+
Sbjct: 456 DTAPSSHIIADKNLEPTSNIQLKKNPDGNLVETSE 490
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 583 PSDFHLFSSLLLEFTYQSGYSLTI 512
PS+ H F S + FTY + +LT+
Sbjct: 154 PSEVHQFLSSMRHFTYHTNVNLTV 177
>SPAC105.02c |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 170
Score = 25.4 bits (53), Expect = 9.4
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Frame = +2
Query: 251 MSNANYSEGKENYPLHECIFIGDVRKLSSLLRNNEVTRKDK---HGNTALHLAVMLGRKE 421
++NA S G N +H C G + L LL + V ++ G+T LH AVM +K+
Sbjct: 39 INNARDSLG--NDCVHVCTKYGSLECLDWLLDISGVNLNNRCRMTGDTPLHFAVMFIKKD 96
Query: 422 ------CVQLLLAHSAPVKVKNLAGWSPL 490
V++L+ A + N G+ P+
Sbjct: 97 QETALRMVEMLMEVGADPLLTNNDGFRPI 125
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 547 QATGSRTNGNQKA*SDTSSLTNSGLLYGT*MGLPFMGSFSL 669
++ GS+T+GN A T L N+ +L G GL +G +L
Sbjct: 247 RSMGSKTSGNTSATFRTVLLANNVVLLGNKPGLGNVGGGAL 287
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,324,326
Number of Sequences: 5004
Number of extensions: 70413
Number of successful extensions: 164
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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