Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B10
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432...    30   1.6  
12_02_0847 + 23630937-23631099,23631200-23631396,23631604-236317...    29   3.7  
02_04_0531 + 23707978-23709021                                         29   4.9  
02_04_0553 - 23808328-23809530                                         28   8.6  
02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023     28   8.6  

>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
            27043601-27043705,27043828-27044257,27044356-27044517,
            27044565-27045260,27045349-27046128,27046441-27046654,
            27047621-27047981,27047993-27048140,27048276-27048419,
            27048784-27048888,27049749-27049794,27050089-27050255,
            27050338-27050490,27050654-27050950,27051053-27051220,
            27051298-27051363,27051451-27051927,27052031-27052768,
            27052935-27053120
          Length = 1993

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/79 (22%), Positives = 35/79 (44%)
 Frame = +1

Query: 466  EKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQXXXXXX 645
            E+ ++ ++ +    AMLQ +KD      N  +Q+K     ++  ++E  +TK Q      
Sbjct: 1431 EEAKKFQKIKMDLLAMLQRVKDVENLNRNEKMQRKDMEEKIARQRMEIEETKRQRDELYH 1490

Query: 646  XXXXXRIKPLTIEGLSVDK 702
                 + + L +E L   K
Sbjct: 1491 ELKDVKEQKLCLERLDSSK 1509


>12_02_0847 +
           23630937-23631099,23631200-23631396,23631604-23631738,
           23631904-23632077,23632195-23632407,23632507-23632751,
           23632890-23632930,23633200-23633238,23633552-23633565
          Length = 406

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +1

Query: 457 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQ 627
           +I E+R+R +  ++   A+L+AMK+      N  ++   E     N +LE  K + Q
Sbjct: 41  EIAEERERFQLEQRGNDALLEAMKE-ELVAANNELEAAKEEISRKNNELESVKKQLQ 96


>02_04_0531 + 23707978-23709021
          Length = 347

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 10 PGSPRTPHSNVAVLPVQEPVP 72
          P SPRTPH+ V  LPV   +P
Sbjct: 37 PDSPRTPHTYVGFLPVFGDLP 57


>02_04_0553 - 23808328-23809530
          Length = 400

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 10  PGSPRTPHSNVAVLPVQEPVP 72
           P SPRTPH+  ++LPV   +P
Sbjct: 73  PDSPRTPHTYGSLLPVYGDLP 93


>02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023
          Length = 432

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 10  PGSPRTPHSNVAVLPVQEPVP 72
           P SPRTPH+  ++LPV   +P
Sbjct: 73  PDSPRTPHTYGSLLPVYGDLP 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.130    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,027,862
Number of Sequences: 37544
Number of extensions: 216180
Number of successful extensions: 837
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)