Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B08
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    30   0.39 
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   2.8  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   8.4  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    25   8.4  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   8.4  

>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 417 DEHADLFTTRIWDPPLRKKTPYYNADPKIEAFSPKPIYNDESKVTEE 557
           D+   +  T++ D  +++K+P  +  PK+   S K  Y DE K+ +E
Sbjct: 548 DDELPVLATKLVDNVIKEKSPL-SLTPKVVVPSHKETYTDEKKLIDE 593


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -1

Query: 428 CMFISNPYCCFSTGFSCQCISSLTII**WY*IWIIMVLVMCSCRINSN 285
           C+FIS   C +S       ++SLT+   W   W++++     C++  N
Sbjct: 481 CLFISGTICQWSLKDMFVLVASLTLFVNW--CWVVVLAFTQICQVAHN 526


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -1

Query: 578 SDCIY*IFFSYLAFIIINRFGRESLNFWISIIV 480
           S C + +  SYL ++ +N+   E++NF+ +I +
Sbjct: 437 SGCDWNVGLSYLNWLFVNKRITEAINFFYTITI 469


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +3

Query: 309 HYKYHDDPYLIPLSN--YRKR 365
           HY+ + DPYL+ LS   YRKR
Sbjct: 166 HYQGNKDPYLLYLSGVVYRKR 186


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 178 SKVRKLHKVVPLVMVYHR 231
           SK+RKLHK+V  V+  HR
Sbjct: 468 SKLRKLHKMVDEVLERHR 485


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,922,180
Number of Sequences: 5004
Number of extensions: 62218
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)