Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_B07
(801 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VVA0 Cluster: CG9705-PA, isoform A; n=4; Diptera|Rep:... 182 1e-44
UniRef50_UPI0000D57810 Cluster: PREDICTED: similar to CG9705-PA,... 162 1e-38
UniRef50_Q5DAJ0 Cluster: SJCHGC09481 protein; n=1; Schistosoma j... 142 9e-33
UniRef50_Q9Y2V2 Cluster: Calcium-regulated heat stable protein 1... 134 2e-30
UniRef50_Q9Y534 Cluster: Cold shock domain-containing protein C2... 129 9e-29
UniRef50_UPI0000E480B9 Cluster: PREDICTED: hypothetical protein;... 125 1e-27
UniRef50_A4VQF2 Cluster: Cold-shock DNA-binding domain protein; ... 54 3e-06
UniRef50_Q5GRS9 Cluster: Cold shock protein; n=3; Wolbachia|Rep:... 50 7e-05
UniRef50_Q03YA9 Cluster: Cold shock protein; n=1; Leuconostoc me... 50 7e-05
UniRef50_P0A353 Cluster: Cold shock-like protein cspA; n=288; Ba... 50 9e-05
UniRef50_Q1QLF4 Cluster: Cold-shock DNA-binding domain protein; ... 49 2e-04
UniRef50_Q5FNZ7 Cluster: Cold shock protein; n=1; Gluconobacter ... 48 3e-04
UniRef50_A7DA86 Cluster: Putative cold-shock DNA-binding domain ... 48 4e-04
UniRef50_A7C0G3 Cluster: Cold-shock DNA-binding domain family pr... 48 4e-04
UniRef50_Q8YIC6 Cluster: COLD SHOCK PROTEIN CSPA; n=4; Brucella|... 47 5e-04
UniRef50_Q024L3 Cluster: Cold-shock DNA-binding domain protein; ... 47 5e-04
UniRef50_Q6N3M1 Cluster: Cold shock DNA binding protein; n=78; B... 47 6e-04
UniRef50_Q9ZBH4 Cluster: Putative DNA-binding protein; n=2; Acti... 46 0.001
UniRef50_A4U251 Cluster: Cold shock DNA-binding domain protein; ... 46 0.001
UniRef50_Q9AN51 Cluster: ID534; n=52; Bacteria|Rep: ID534 - Brad... 46 0.001
UniRef50_Q72AY2 Cluster: Cold shock domain protein; n=3; Desulfo... 45 0.002
UniRef50_Q2S3Y3 Cluster: 'Cold-shock' DNA-binding domain, putati... 45 0.002
UniRef50_Q0SKK0 Cluster: Cold shock protein; n=20; Bacteria|Rep:... 45 0.002
UniRef50_Q7D268 Cluster: AGR_C_161p; n=7; Proteobacteria|Rep: AG... 45 0.003
UniRef50_Q3VJZ1 Cluster: Cold-shock protein, DNA-binding precurs... 45 0.003
UniRef50_Q1AWL7 Cluster: Cold-shock DNA-binding domain protein; ... 45 0.003
UniRef50_Q87NH9 Cluster: Cold shock transcriptional regulator Cs... 44 0.003
UniRef50_A0PKE1 Cluster: DNA-binding protein; n=1; Mycobacterium... 44 0.003
UniRef50_Q8I248 Cluster: Cold-shock protein, putative; n=3; Plas... 44 0.003
UniRef50_Q8G880 Cluster: Cold shock protein; n=3; Bifidobacteriu... 44 0.004
UniRef50_Q607Y7 Cluster: Cold-shock DNA-binding domain protein; ... 44 0.004
UniRef50_Q475L4 Cluster: Cold-shock protein, DNA-binding; n=1; R... 44 0.004
UniRef50_Q2RZT3 Cluster: Conserved domain protein; n=2; Saliniba... 44 0.004
UniRef50_Q3W076 Cluster: Cold-shock DNA-binding domain; n=2; Fra... 44 0.004
UniRef50_Q28L70 Cluster: Cold-shock DNA-binding domain protein; ... 44 0.004
UniRef50_P0A971 Cluster: Cold shock-like protein cspD; n=12; Gam... 44 0.004
UniRef50_Q8D9R0 Cluster: Cold shock domain family protein; n=6; ... 44 0.006
UniRef50_Q9KI38 Cluster: Ysb; n=2; Agrobacterium tumefaciens|Rep... 44 0.006
UniRef50_A0ACJ4 Cluster: Putative DNA-binding protein; n=3; Acti... 44 0.006
UniRef50_Q2RQP4 Cluster: Cold-shock DNA-binding domain protein; ... 43 0.008
UniRef50_A6E2L2 Cluster: Cold-shock DNA-binding domain protein; ... 43 0.008
UniRef50_A4FKV9 Cluster: Putative DNA-binding protein; n=1; Sacc... 43 0.008
UniRef50_A5BWB0 Cluster: Putative uncharacterized protein; n=1; ... 43 0.008
UniRef50_P72188 Cluster: Cold shock protein capA; n=23; Proteoba... 43 0.008
UniRef50_A3J3Q2 Cluster: Cold shock protein; n=7; Flavobacterial... 43 0.010
UniRef50_Q89E28 Cluster: Cold shock protein; n=8; cellular organ... 42 0.018
UniRef50_A7BTG1 Cluster: Cold-shock protein, DNA-binding; n=1; B... 42 0.018
UniRef50_A0YBV1 Cluster: CspA-like protein; n=17; Proteobacteria... 42 0.018
UniRef50_A0UNB6 Cluster: Cold-shock DNA-binding domain protein; ... 42 0.018
UniRef50_Q38896 Cluster: Glycine-rich protein 2b; n=26; cellular... 42 0.018
UniRef50_Q6ALH9 Cluster: Hypothetical cold-shock protein; n=1; D... 41 0.032
UniRef50_Q7WXG5 Cluster: Putative uncharacterized protein; n=1; ... 41 0.032
UniRef50_Q4JMV8 Cluster: Predicted cold shock family protein; n=... 41 0.032
UniRef50_Q4F6X8 Cluster: Cold shock protein; n=6; Gammaproteobac... 41 0.032
UniRef50_Q08VT0 Cluster: Conserved domain protein; n=2; Bacteria... 41 0.032
UniRef50_A1U4X1 Cluster: Putative uncharacterized protein; n=1; ... 41 0.032
UniRef50_Q82WG3 Cluster: Cold-shock DNA-binding domain; n=5; Bac... 41 0.042
UniRef50_Q605X3 Cluster: Cold-shock domain family protein; n=1; ... 41 0.042
UniRef50_Q1GQL9 Cluster: Cold-shock DNA-binding domain protein; ... 41 0.042
UniRef50_Q0YRJ0 Cluster: Cold-shock protein, DNA-binding; n=1; C... 41 0.042
UniRef50_Q0M3I1 Cluster: Cold-shock protein, DNA-binding; n=1; C... 41 0.042
UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=... 41 0.042
UniRef50_A3BPB0 Cluster: Putative uncharacterized protein; n=2; ... 41 0.042
UniRef50_A0CIJ2 Cluster: Chromosome undetermined scaffold_19, wh... 41 0.042
UniRef50_A1CFX7 Cluster: Cold shock NA binding domain protein; n... 41 0.042
UniRef50_P39818 Cluster: Cold shock-like protein cspJ; n=7; Bact... 41 0.042
UniRef50_P0A9Y2 Cluster: Cold shock protein cspA; n=39; Gammapro... 41 0.042
UniRef50_Q835L0 Cluster: Cold-shock domain family protein; n=24;... 40 0.055
UniRef50_A7HXE8 Cluster: Putative cold-shock DNA-binding domain ... 40 0.055
UniRef50_A2SHE7 Cluster: Cold-shock DNA-binding domain; n=1; Met... 40 0.055
UniRef50_Q83RI9 Cluster: Cold shock-like protein cspC; n=38; Gam... 40 0.055
UniRef50_P0A363 Cluster: Cold shock-like protein cspB; n=367; ro... 40 0.055
UniRef50_Q11D48 Cluster: Cold-shock DNA-binding domain protein; ... 40 0.073
UniRef50_A3X5Q6 Cluster: Putative uncharacterized protein; n=1; ... 40 0.073
UniRef50_A1ZFN2 Cluster: Conserved domain protein; n=2; Flexibac... 40 0.073
UniRef50_Q75QN8 Cluster: Cold shock domain protein 3; n=2; Triti... 40 0.073
UniRef50_P0A975 Cluster: Cold shock-like protein cspE; n=28; Bac... 40 0.073
UniRef50_Q9ZCP9 Cluster: Cold shock-like protein cspA; n=12; Bac... 40 0.073
UniRef50_Q1RHK6 Cluster: Cold shock-like protein cspA; n=2; Rick... 40 0.073
UniRef50_A1L2L1 Cluster: LOC100036881 protein; n=1; Xenopus laev... 40 0.096
UniRef50_Q982F0 Cluster: Cold-shock protein; n=3; Mesorhizobium ... 40 0.096
UniRef50_Q6ARQ9 Cluster: Hypothetical cold-shock protein; n=1; D... 40 0.096
UniRef50_Q9Z3S6 Cluster: Cold shock protein cspA; n=59; Alphapro... 40 0.096
UniRef50_Q15SJ6 Cluster: Cold-shock DNA-binding domain protein; ... 39 0.13
UniRef50_P0A981 Cluster: Cold shock-like protein cspG; n=154; Ba... 39 0.13
UniRef50_Q1QDS0 Cluster: Cold-shock DNA-binding domain protein; ... 39 0.17
UniRef50_Q8KES2 Cluster: Cold shock-like protein CspG; n=9; Chlo... 38 0.22
UniRef50_Q8EIU8 Cluster: Cold shock domain family protein; n=7; ... 38 0.22
UniRef50_O65639 Cluster: Glycine-rich protein; n=8; Magnoliophyt... 38 0.22
UniRef50_A0DVR0 Cluster: Chromosome undetermined scaffold_66, wh... 38 0.22
UniRef50_Q4FUZ6 Cluster: Possible guanine-specific ribonuclease ... 38 0.29
UniRef50_Q2S0T4 Cluster: Conserved domain protein; n=2; Bacteroi... 38 0.29
UniRef50_Q2JGE4 Cluster: Cold-shock DNA-binding domain protein; ... 38 0.29
UniRef50_Q1ZUW9 Cluster: Predicted membrane protein; n=3; Vibrio... 38 0.29
UniRef50_Q1AY27 Cluster: Cold-shock DNA-binding domain protein; ... 38 0.29
UniRef50_Q0KYJ4 Cluster: Cold-shock DNA-binding domain protein; ... 38 0.29
UniRef50_Q0BPU3 Cluster: Cold shock protein; n=1; Granulibacter ... 38 0.29
UniRef50_A5ZXC4 Cluster: Putative uncharacterized protein; n=2; ... 38 0.29
UniRef50_A4KQU6 Cluster: Cold shock protein; n=7; Francisella tu... 38 0.29
UniRef50_A2UVR3 Cluster: Cold-shock DNA-binding domain protein; ... 38 0.29
UniRef50_P39158 Cluster: Cold shock protein cspC; n=41; Bacteria... 38 0.29
UniRef50_Q9S1B7 Cluster: Cold shock-like protein cspA; n=10; Bac... 38 0.29
UniRef50_Q5ZWM5 Cluster: Cold shock domain family protein; n=6; ... 38 0.39
UniRef50_Q2J4H7 Cluster: Cold-shock DNA-binding domain protein; ... 38 0.39
UniRef50_Q1YTJ3 Cluster: Cold shock protein; n=1; gamma proteoba... 38 0.39
UniRef50_A7RV03 Cluster: Predicted protein; n=1; Nematostella ve... 38 0.39
UniRef50_Q9VRN5 Cluster: Lin-28 homolog; n=1; Drosophila melanog... 38 0.39
UniRef50_Q5XG60 Cluster: LOC443686 protein; n=2; Xenopus laevis|... 37 0.51
UniRef50_Q1ZDW9 Cluster: Cold-shock DNA-binding domain protein; ... 37 0.51
UniRef50_Q1K0A5 Cluster: Cold-shock DNA-binding domain protein; ... 37 0.51
UniRef50_A7BYF1 Cluster: Putative uncharacterized protein; n=1; ... 37 0.51
UniRef50_A3Y9L0 Cluster: Cold-shock DNA-binding domain protein; ... 37 0.51
UniRef50_P54584 Cluster: Cold shock protein; n=6; Bacteria|Rep: ... 37 0.51
UniRef50_P72366 Cluster: Cold shock-like protein cspA; n=29; Bac... 37 0.51
UniRef50_Q9KXN2 Cluster: Cold shock protein B; n=7; Bacteria|Rep... 37 0.68
UniRef50_Q6N6T9 Cluster: Cold shock DNA binding protein; n=38; A... 37 0.68
UniRef50_A4RZ32 Cluster: Predicted protein; n=1; Ostreococcus lu... 37 0.68
UniRef50_Q5CVY2 Cluster: Cold shock RNA binding domain of the OB... 37 0.68
UniRef50_UPI00015BD510 Cluster: UPI00015BD510 related cluster; n... 36 0.90
UniRef50_Q8D046 Cluster: Cold shock protein; n=14; Enterobacteri... 36 0.90
UniRef50_Q1N1Z0 Cluster: Cold shock protein; n=14; Bacteria|Rep:... 36 0.90
UniRef50_Q1GT29 Cluster: Cold-shock DNA-binding domain protein; ... 36 0.90
UniRef50_Q03EZ0 Cluster: Cold shock protein; n=1; Pediococcus pe... 36 0.90
UniRef50_A1GFH1 Cluster: Cold-shock DNA-binding domain protein; ... 36 0.90
UniRef50_Q5JKD6 Cluster: Cold shock domain protein 2-like protei... 36 0.90
UniRef50_A3X259 Cluster: Cold shock protein; n=1; Nitrobacter sp... 36 1.2
UniRef50_Q23960 Cluster: Y-box protein; n=2; Dugesia|Rep: Y-box ... 36 1.2
UniRef50_A2E698 Cluster: Putative uncharacterized protein; n=1; ... 36 1.2
UniRef50_Q9HSS3 Cluster: Cold shock protein; n=7; Halobacteriace... 36 1.2
UniRef50_Q9I0L6 Cluster: Cold-shock protein CspD; n=12; Gammapro... 36 1.6
UniRef50_Q88Q61 Cluster: Cold shock DNA-binding domain protein; ... 36 1.6
UniRef50_Q2RNN9 Cluster: Cold-shock DNA-binding domain protein; ... 36 1.6
UniRef50_Q127M7 Cluster: Cold-shock DNA-binding domain protein; ... 36 1.6
UniRef50_P62169 Cluster: Cold shock-like protein cspC; n=26; cel... 36 1.6
UniRef50_Q3Y013 Cluster: Cold-shock protein, DNA-binding; n=6; c... 35 2.1
UniRef50_Q1GHI4 Cluster: Cold-shock DNA-binding domain protein; ... 35 2.1
UniRef50_Q12K82 Cluster: Putative uncharacterized protein; n=1; ... 35 2.1
UniRef50_A5NZH6 Cluster: Putative cold-shock DNA-binding domain ... 35 2.1
UniRef50_A3YG84 Cluster: Cold-shock protein CspD; n=1; Marinomon... 35 2.1
UniRef50_Q016S2 Cluster: Putative nucleic acid binding protein; ... 35 2.1
UniRef50_P0A985 Cluster: Cold shock-like protein cspH; n=24; Ent... 35 2.1
UniRef50_Q5L9T7 Cluster: Cold shock-like protein; n=2; Bacteroid... 35 2.7
UniRef50_Q9ZFK9 Cluster: CspA; n=25; Bacteria|Rep: CspA - Myxoco... 35 2.7
UniRef50_Q8GI47 Cluster: Cold shock protein homolog; n=5; Deinoc... 35 2.7
UniRef50_Q1QAP9 Cluster: Cold-shock DNA-binding domain protein; ... 35 2.7
UniRef50_A6C742 Cluster: Cold-shock DNA-binding domain; n=1; Pla... 35 2.7
UniRef50_A3XVA6 Cluster: Putative uncharacterized protein; n=1; ... 35 2.7
UniRef50_A2TNS0 Cluster: Cold shock protein; n=4; Bacteroidetes|... 35 2.7
UniRef50_Q7RCZ7 Cluster: Putative uncharacterized protein PY0562... 35 2.7
UniRef50_Q2LZN5 Cluster: GA14466-PA; n=3; Endopterygota|Rep: GA1... 35 2.7
UniRef50_Q60AQ4 Cluster: Cold shock protein; n=27; Bacteria|Rep:... 34 3.6
UniRef50_O53689 Cluster: POSSIBLE CONSERVED MEMBRANE PROTEIN; n=... 34 3.6
UniRef50_A4SJX6 Cluster: Cold-shock protein, DNA-binding; n=2; A... 34 3.6
UniRef50_A3VSH0 Cluster: Cold shock protein; n=1; Parvularcula b... 34 3.6
UniRef50_A3UBK6 Cluster: Cold-shock DNA-binding domain protein; ... 34 3.6
UniRef50_A3S070 Cluster: Cold shock protein; n=1; Ralstonia sola... 34 3.6
UniRef50_Q48H64 Cluster: Cold shock domain protein CspD; n=7; Pr... 34 4.8
UniRef50_Q28PH1 Cluster: Cold-shock DNA-binding domain protein; ... 34 4.8
UniRef50_Q0I3L0 Cluster: Cold shock-like protein; n=2; Proteobac... 34 4.8
UniRef50_A4VMZ2 Cluster: Cold shock protein CspA; n=12; Bacteria... 34 4.8
UniRef50_A4LXQ2 Cluster: Cold-shock DNA-binding domain protein; ... 34 4.8
UniRef50_A0D610 Cluster: Chromosome undetermined scaffold_39, wh... 34 4.8
UniRef50_Q74BX3 Cluster: Cold shock domain family protein; n=13;... 33 6.3
UniRef50_Q013V8 Cluster: Glycogen debranching enzyme; n=1; Ostre... 33 6.3
UniRef50_P92186 Cluster: Protein lin-28; n=5; Caenorhabditis|Rep... 33 6.3
UniRef50_Q48493 Cluster: Major cold shock protein; n=50; Bacteri... 33 6.3
UniRef50_Q1FKR2 Cluster: Cold-shock protein, DNA-binding; n=2; C... 33 8.4
UniRef50_A4BC11 Cluster: Cold shock protein; n=1; Reinekea sp. M... 33 8.4
UniRef50_A1TSW1 Cluster: Cold-shock DNA-binding domain protein; ... 33 8.4
UniRef50_A0YCJ0 Cluster: Cold-shock DNA-binding protein; n=1; ma... 33 8.4
UniRef50_Q9VMU5 Cluster: CG14039-PA, isoform A; n=9; Diptera|Rep... 33 8.4
>UniRef50_Q9VVA0 Cluster: CG9705-PA, isoform A; n=4; Diptera|Rep:
CG9705-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 143
Score = 182 bits (442), Expect = 1e-44
Identities = 80/109 (73%), Positives = 91/109 (83%)
Frame = +3
Query: 144 NSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHIS 323
N+ LQLPSPIITRR RTASTS RAL NP+ TG +K+F R KGHGF+ P GGED+F H+S
Sbjct: 26 NASLQLPSPIITRRTRTASTSARALENPVVTGMVKSFSRTKGHGFITPNAGGEDVFCHVS 85
Query: 324 DIEGEYVPLPGDEVIYRLCPIPPKFEKFQAVHVRIIHLTPEKHVKWDEP 470
DIEGEYVP+PGDEV YRLC IPPK+EK QAVHV+I HLTPE H KW+EP
Sbjct: 86 DIEGEYVPMPGDEVKYRLCAIPPKYEKHQAVHVQISHLTPEVHHKWEEP 134
>UniRef50_UPI0000D57810 Cluster: PREDICTED: similar to CG9705-PA,
isoform A; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to CG9705-PA, isoform A - Tribolium castaneum
Length = 121
Score = 162 bits (393), Expect = 1e-38
Identities = 71/107 (66%), Positives = 87/107 (81%)
Frame = +3
Query: 144 NSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHIS 323
N+HL +PSP+IT+RNRT ST ER L + G+IK+FCREKGHGF+ PE G EDIF+HIS
Sbjct: 14 NTHL-IPSPLITKRNRTPSTCERILKHQNLYGEIKSFCREKGHGFITPEDGSEDIFVHIS 72
Query: 324 DIEGEYVPLPGDEVIYRLCPIPPKFEKFQAVHVRIIHLTPEKHVKWD 464
DIE EY+P+PGD V Y+LCPIPPKFEK QAVHV I++L PE H +W+
Sbjct: 73 DIEDEYIPIPGDRVKYQLCPIPPKFEKHQAVHVHIVNLKPEVHKRWE 119
>UniRef50_Q5DAJ0 Cluster: SJCHGC09481 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC09481 protein - Schistosoma
japonicum (Blood fluke)
Length = 117
Score = 142 bits (344), Expect = 9e-33
Identities = 63/115 (54%), Positives = 83/115 (72%)
Frame = +3
Query: 126 DSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGED 305
+ P S+L +PSPI +RNRT S SE A G+I +FCR+KGHGF+KP+ GG+
Sbjct: 2 EPPPNPASNLVIPSPIFHKRNRTESQSESASTGEHGVGRIVSFCRKKGHGFIKPDNGGDY 61
Query: 306 IFLHISDIEGEYVPLPGDEVIYRLCPIPPKFEKFQAVHVRIIHLTPEKHVKWDEP 470
+F+H+ DI+GEYVP+ GD V YR IPPK EK+QAVHVRI++L+ KH+ WDEP
Sbjct: 62 LFVHVFDIDGEYVPIEGDVVEYRKMLIPPKNEKYQAVHVRIVNLSSGKHITWDEP 116
>UniRef50_Q9Y2V2 Cluster: Calcium-regulated heat stable protein 1;
n=14; Euteleostomi|Rep: Calcium-regulated heat stable
protein 1 - Homo sapiens (Human)
Length = 147
Score = 134 bits (324), Expect = 2e-30
Identities = 64/112 (57%), Positives = 76/112 (67%), Gaps = 1/112 (0%)
Frame = +3
Query: 129 SPNKTNSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDI 308
SP+ ++ +PSP+ TRR RT S + RA P+ G K FCR KGHGF+ P GG DI
Sbjct: 30 SPSPLRGNV-VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDI 88
Query: 309 FLHISDIEGEYVPLPGDEVIYRLCPIPPKFEKFQAVHVRIIHLTP-EKHVKW 461
FLHISD+EGEYVP+ GDEV Y++C IPPK EK QAV V I HL P KH W
Sbjct: 89 FLHISDVEGEYVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 140
>UniRef50_Q9Y534 Cluster: Cold shock domain-containing protein C2;
n=33; Euteleostomi|Rep: Cold shock domain-containing
protein C2 - Homo sapiens (Human)
Length = 153
Score = 129 bits (311), Expect = 9e-29
Identities = 58/102 (56%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
Frame = +3
Query: 159 LPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
LPSP+ T+R RT S + RA P+ G K F R +GHGF+ PE G EDIF+H+SDIEGE
Sbjct: 45 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 104
Query: 339 YVPLPGDEVIYRLCPIPPKFEKFQAVHVRIIHLTPE-KHVKW 461
YVP+ GDEV Y++CPIPPK +KFQAV V + L P H W
Sbjct: 105 YVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETW 146
>UniRef50_UPI0000E480B9 Cluster: PREDICTED: hypothetical protein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 266
Score = 125 bits (301), Expect = 1e-27
Identities = 59/106 (55%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Frame = +3
Query: 150 HLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 329
H +PSP++TRR RT S S A PL+ G I F R KGHGF+ + G IFLHISDI
Sbjct: 27 HFLIPSPVVTRRTRTTSVSRVASEGPLKKGTIAEFERSKGHGFISSDDDGSRIFLHISDI 86
Query: 330 EGEYVPLPGDEVIYRLCPIPPKFEKFQAVHVRIIHLTP-EKHVKWD 464
EGEYVP+ GD V YR CPIPPK ++ QAV V + L P KH WD
Sbjct: 87 EGEYVPVAGDRVEYRECPIPPKMDQKQAVEVVLTQLEPGSKHESWD 132
>UniRef50_A4VQF2 Cluster: Cold-shock DNA-binding domain protein;
n=10; Pseudomonas|Rep: Cold-shock DNA-binding domain
protein - Pseudomonas stutzeri (strain A1501)
Length = 235
Score = 54.4 bits (125), Expect = 3e-06
Identities = 21/45 (46%), Positives = 34/45 (75%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGEYVPLPGDEVIY 371
G +K++ +KG GF++PE+GGE++F+HIS + GE PL G V++
Sbjct: 5 GTLKSWNDDKGFGFIRPEQGGEELFVHISAVHGERRPLVGGRVLF 49
>UniRef50_Q5GRS9 Cluster: Cold shock protein; n=3; Wolbachia|Rep:
Cold shock protein - Wolbachia sp. subsp. Brugia malayi
(strain TRS)
Length = 84
Score = 50.0 bits (114), Expect = 7e-05
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
+E G IK F EKG+GF+KPE G DIF+HIS +E
Sbjct: 1 MEFGNIKWFNAEKGYGFIKPEANGNDIFVHISTLE 35
>UniRef50_Q03YA9 Cluster: Cold shock protein; n=1; Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293|Rep: Cold
shock protein - Leuconostoc mesenteroides subsp.
mesenteroides (strain ATCC 8293 /NCDO 523)
Length = 74
Score = 50.0 bits (114), Expect = 7e-05
Identities = 22/68 (32%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHIS--DIEGEYVPLPGDEVIYRLCPIPPKFE 401
++TG +K + +E+G+G++ P++GG+D+F+H + D++G + G++V Y L ++
Sbjct: 1 MKTGTVKIWQKERGYGYITPDEGGDDVFVHFNGIDMDGFKSLIQGEKVAYVLV---QGYK 57
Query: 402 KFQAVHVR 425
+QA VR
Sbjct: 58 SYQAAQVR 65
>UniRef50_P0A353 Cluster: Cold shock-like protein cspA; n=288;
Bacteria|Rep: Cold shock-like protein cspA - Bordetella
bronchiseptica (Alcaligenes bronchisepticus)
Length = 67
Score = 49.6 bits (113), Expect = 9e-05
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
+ETG +K F EKG+GF+ PE GG+D+F H S+I+
Sbjct: 1 METGVVKWFNAEKGYGFITPEAGGKDLFAHFSEIQ 35
>UniRef50_Q1QLF4 Cluster: Cold-shock DNA-binding domain protein;
n=1; Nitrobacter hamburgensis X14|Rep: Cold-shock
DNA-binding domain protein - Nitrobacter hamburgensis
(strain X14 / DSM 10229)
Length = 68
Score = 48.8 bits (111), Expect = 2e-04
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGEY-VPLPGDEVIYRL 377
++TG +K F EKG+GF++P+ G DIFLH+ + + P P D V Y +
Sbjct: 1 MQTGSVKFFNAEKGYGFIQPDDGTPDIFLHVHGLADKLRYPCPRDRVEYEV 51
>UniRef50_Q5FNZ7 Cluster: Cold shock protein; n=1; Gluconobacter
oxydans|Rep: Cold shock protein - Gluconobacter oxydans
(Gluconobacter suboxydans)
Length = 96
Score = 48.0 bits (109), Expect = 3e-04
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE--GEYVPLPGDEVIYRL 377
+ TG +K F KG GF++P+ GG+D F+HIS++E G + G V Y L
Sbjct: 29 MATGTVKWFNSTKGFGFIQPDNGGQDAFVHISELERAGMHTLNEGQHVSYEL 80
>UniRef50_A7DA86 Cluster: Putative cold-shock DNA-binding domain
protein; n=3; Methylobacterium extorquens PA1|Rep:
Putative cold-shock DNA-binding domain protein -
Methylobacterium extorquens PA1
Length = 69
Score = 47.6 bits (108), Expect = 4e-04
Identities = 17/35 (48%), Positives = 27/35 (77%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
+ TG +K F KG+GF++P+ GG+D+F+HIS +E
Sbjct: 1 MATGTVKWFNETKGYGFIQPDNGGKDVFVHISAVE 35
>UniRef50_A7C0G3 Cluster: Cold-shock DNA-binding domain family
protein; n=1; Beggiatoa sp. PS|Rep: Cold-shock
DNA-binding domain family protein - Beggiatoa sp. PS
Length = 225
Score = 47.6 bits (108), Expect = 4e-04
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE-YVPLPGDEVIY 371
GKI + +KG GF+ PEKGGE +F HIS I+ + P GD V+Y
Sbjct: 3 GKILQWKDDKGFGFILPEKGGEKLFFHISSIKNQSRHPQVGDAVLY 48
>UniRef50_Q8YIC6 Cluster: COLD SHOCK PROTEIN CSPA; n=4;
Brucella|Rep: COLD SHOCK PROTEIN CSPA - Brucella
melitensis
Length = 101
Score = 47.2 bits (107), Expect = 5e-04
Identities = 17/36 (47%), Positives = 27/36 (75%)
Frame = +3
Query: 225 PLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
P+ TG +K F KG GF++P++GG D+F+HIS ++
Sbjct: 32 PMATGTVKWFNTTKGFGFIQPDQGGTDVFVHISAVQ 67
>UniRef50_Q024L3 Cluster: Cold-shock DNA-binding domain protein;
n=1; Solibacter usitatus Ellin6076|Rep: Cold-shock
DNA-binding domain protein - Solibacter usitatus (strain
Ellin6076)
Length = 144
Score = 47.2 bits (107), Expect = 5e-04
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +3
Query: 231 ETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI-EGEYVPL-PGDEVIYRL 377
++G + T+ KG GF++P+ GG DIF H+S + EG L PG V+Y L
Sbjct: 69 QSGSVVTYFEAKGFGFLRPDDGGRDIFFHVSRLSEGLATDLRPGTRVLYEL 119
>UniRef50_Q6N3M1 Cluster: Cold shock DNA binding protein; n=78;
Bacteria|Rep: Cold shock DNA binding protein -
Rhodopseudomonas palustris
Length = 84
Score = 46.8 bits (106), Expect = 6e-04
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +3
Query: 225 PLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
P+ G +K F KG+GF++P+ GG D+F+HIS +E
Sbjct: 14 PVSMGTVKWFNATKGYGFIQPDDGGNDVFVHISAVE 49
>UniRef50_Q9ZBH4 Cluster: Putative DNA-binding protein; n=2;
Actinomycetales|Rep: Putative DNA-binding protein -
Streptomyces coelicolor
Length = 162
Score = 46.0 bits (104), Expect = 0.001
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +3
Query: 216 LGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 329
LG + G++ F +G+GF+ PE GGED+FLH++D+
Sbjct: 17 LGVRMVAGRVVRFDGTRGYGFIAPEDGGEDVFLHVNDL 54
>UniRef50_A4U251 Cluster: Cold shock DNA-binding domain protein;
n=3; Magnetospirillum|Rep: Cold shock DNA-binding domain
protein - Magnetospirillum gryphiswaldense
Length = 209
Score = 46.0 bits (104), Expect = 0.001
Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +3
Query: 192 TASTSERALGNPLET--GKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
+AS++ R P ET G +K F EKG GFV+ ++GG+D+F+HI +E
Sbjct: 129 SASSAPRMDRGPSETVEGVVKFFSAEKGFGFVQTDQGGKDVFVHIKALE 177
Score = 37.5 bits (83), Expect = 0.39
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +3
Query: 192 TASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
T+S + + T +K F KG GFV P G D FLHIS +E
Sbjct: 39 TSSFDRQQVTQTNVTATVKWFNASKGFGFVAPSDGTPDAFLHISALE 85
>UniRef50_Q9AN51 Cluster: ID534; n=52; Bacteria|Rep: ID534 -
Bradyrhizobium japonicum
Length = 120
Score = 45.6 bits (103), Expect = 0.001
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +3
Query: 222 NPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE-GEYVPL-PGDEVIYRL 377
N + G +K F KG+GFV P+ GG+D+F+HIS +E Y L G +V Y L
Sbjct: 51 NDVALGTVKWFNPTKGYGFVAPDDGGKDVFVHISAVEKAGYTSLVEGAKVGYEL 104
>UniRef50_Q72AY2 Cluster: Cold shock domain protein; n=3;
Desulfovibrio vulgaris subsp. vulgaris|Rep: Cold shock
domain protein - Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB8303)
Length = 178
Score = 45.2 bits (102), Expect = 0.002
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +3
Query: 231 ETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGEYVPLP--GDEVIYRLCPIPPKFEK 404
+ GKI + E+G GF+ P+ G +F HIS + PLP G+ V+Y L P PK +
Sbjct: 3 DQGKIAQWNDERGFGFISPDDGSPRVFAHISAFRSRH-PLPEVGERVLYYLGPPSPKGSR 61
Query: 405 FQAV 416
V
Sbjct: 62 ASVV 65
>UniRef50_Q2S3Y3 Cluster: 'Cold-shock' DNA-binding domain, putative;
n=1; Salinibacter ruber DSM 13855|Rep: 'Cold-shock'
DNA-binding domain, putative - Salinibacter ruber
(strain DSM 13855)
Length = 69
Score = 45.2 bits (102), Expect = 0.002
Identities = 17/37 (45%), Positives = 27/37 (72%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
+ETG +K F +G+GFV+P+ G +D+FLH S++ E
Sbjct: 1 METGTVKWFSPAEGYGFVEPDNGEDDVFLHHSEVPDE 37
>UniRef50_Q0SKK0 Cluster: Cold shock protein; n=20; Bacteria|Rep:
Cold shock protein - Rhodococcus sp. (strain RHA1)
Length = 119
Score = 45.2 bits (102), Expect = 0.002
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI--EGEYVPLPGDEVIYRLC 380
L TG ++ F E+G GF+ P G +DIF+H+S+I +G + G V + +C
Sbjct: 53 LRTGTVRWFNAEQGFGFLAPADGSDDIFVHVSEIAGDGHRILEEGQRVSFAVC 105
>UniRef50_Q7D268 Cluster: AGR_C_161p; n=7; Proteobacteria|Rep:
AGR_C_161p - Agrobacterium tumefaciens (strain C58 /
ATCC 33970)
Length = 163
Score = 44.8 bits (101), Expect = 0.003
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
+ TG +K F KG+GF++P+ G +D+F+HIS +E
Sbjct: 95 MATGTVKWFNATKGYGFIQPDDGSQDVFVHISAVE 129
>UniRef50_Q3VJZ1 Cluster: Cold-shock protein, DNA-binding precursor;
n=2; Bacteroidetes/Chlorobi group|Rep: Cold-shock
protein, DNA-binding precursor - Pelodictyon
phaeoclathratiforme BU-1
Length = 91
Score = 44.8 bits (101), Expect = 0.003
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +3
Query: 231 ETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
+TG +K F + KG GF+ P+ GG D+F+HI+++E
Sbjct: 25 DTGTVKWFNKMKGFGFIIPDNGGADVFVHINELE 58
>UniRef50_Q1AWL7 Cluster: Cold-shock DNA-binding domain protein;
n=3; Bacteria|Rep: Cold-shock DNA-binding domain protein
- Rubrobacter xylanophilus (strain DSM 9941 / NBRC
16129)
Length = 197
Score = 44.8 bits (101), Expect = 0.003
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Frame = +3
Query: 231 ETGKIKTFCREKGHGF-VKPEKGGEDIFLHISDIEGEYVPL-PGDEVIYRL 377
E G++K F EKG+GF V+P GGED+F+H S++EG+ L G EV Y +
Sbjct: 134 EQGRVKWFDPEKGYGFLVRP--GGEDLFVHHSEVEGDASSLGQGVEVEYEV 182
>UniRef50_Q87NH9 Cluster: Cold shock transcriptional regulator CspA;
n=21; Bacteria|Rep: Cold shock transcriptional regulator
CspA - Vibrio parahaemolyticus
Length = 70
Score = 44.4 bits (100), Expect = 0.003
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +3
Query: 234 TGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 329
TG +K F KG GF+ PE GGED+F+H I
Sbjct: 6 TGSVKWFNETKGFGFISPENGGEDLFVHFQSI 37
>UniRef50_A0PKE1 Cluster: DNA-binding protein; n=1; Mycobacterium
ulcerans Agy99|Rep: DNA-binding protein - Mycobacterium
ulcerans (strain Agy99)
Length = 135
Score = 44.4 bits (100), Expect = 0.003
Identities = 16/33 (48%), Positives = 25/33 (75%)
Frame = +3
Query: 234 TGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
TG+I F +G+GF+ P+ GGED+FLH +D++
Sbjct: 4 TGRIVRFDDVRGYGFIAPDSGGEDVFLHANDLD 36
>UniRef50_Q8I248 Cluster: Cold-shock protein, putative; n=3;
Plasmodium|Rep: Cold-shock protein, putative -
Plasmodium falciparum (isolate 3D7)
Length = 150
Score = 44.4 bits (100), Expect = 0.003
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +3
Query: 234 TGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 329
TG + F + KG+GF+KP GG DIF+H +DI
Sbjct: 31 TGNVIMFDKRKGYGFIKPNDGGPDIFVHYTDI 62
>UniRef50_Q8G880 Cluster: Cold shock protein; n=3;
Bifidobacterium|Rep: Cold shock protein -
Bifidobacterium longum
Length = 79
Score = 44.0 bits (99), Expect = 0.004
Identities = 15/34 (44%), Positives = 26/34 (76%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
G +K F +KG GF++P+ GGED+F+H ++I+ +
Sbjct: 4 GTVKFFLAKKGFGFIQPDDGGEDVFVHYAEIKDD 37
>UniRef50_Q607Y7 Cluster: Cold-shock DNA-binding domain protein;
n=1; Methylococcus capsulatus|Rep: Cold-shock
DNA-binding domain protein - Methylococcus capsulatus
Length = 305
Score = 44.0 bits (99), Expect = 0.004
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 234 TGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEG 335
+G + +F EKG GF+ P+ GG++ F H+SD+ G
Sbjct: 238 SGTVLSFFHEKGFGFITPDNGGDNFFFHVSDLTG 271
>UniRef50_Q475L4 Cluster: Cold-shock protein, DNA-binding; n=1;
Ralstonia eutropha JMP134|Rep: Cold-shock protein,
DNA-binding - Ralstonia eutropha (strain JMP134)
(Alcaligenes eutrophus)
Length = 195
Score = 44.0 bits (99), Expect = 0.004
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +3
Query: 216 LGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISD 326
L N +G +K++ ++KG GF+ P GG DIF+HISD
Sbjct: 7 LMNTRISGTLKSWNKDKGFGFIAPSNGGRDIFVHISD 43
>UniRef50_Q2RZT3 Cluster: Conserved domain protein; n=2;
Salinibacter ruber DSM 13855|Rep: Conserved domain
protein - Salinibacter ruber (strain DSM 13855)
Length = 75
Score = 44.0 bits (99), Expect = 0.004
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEG 335
+E GK+K F +G GF++P G ED+FLH ++I G
Sbjct: 1 MEKGKLKFFDTSRGFGFIEPLDGSEDVFLHANNISG 36
>UniRef50_Q3W076 Cluster: Cold-shock DNA-binding domain; n=2;
Frankia|Rep: Cold-shock DNA-binding domain - Frankia sp.
EAN1pec
Length = 146
Score = 44.0 bits (99), Expect = 0.004
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 329
+ TGK+ F +G+GF+ P GGED+FLH +D+
Sbjct: 1 MSTGKVLRFDHVRGYGFLAPSDGGEDVFLHANDL 34
>UniRef50_Q28L70 Cluster: Cold-shock DNA-binding domain protein;
n=11; Bacteria|Rep: Cold-shock DNA-binding domain
protein - Jannaschia sp. (strain CCS1)
Length = 68
Score = 44.0 bits (99), Expect = 0.004
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
+ G +K F KG GF+ PE GG+D+F+HIS +E
Sbjct: 1 MANGTVKWFNSTKGFGFIAPETGGKDVFVHISAVE 35
>UniRef50_P0A971 Cluster: Cold shock-like protein cspD; n=12;
Gammaproteobacteria|Rep: Cold shock-like protein cspD -
Shigella flexneri
Length = 74
Score = 44.0 bits (99), Expect = 0.004
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
+E G +K F KG GF+ PE GGEDIF H S I+
Sbjct: 1 MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQ 35
>UniRef50_Q8D9R0 Cluster: Cold shock domain family protein; n=6;
Vibrio|Rep: Cold shock domain family protein - Vibrio
vulnificus
Length = 155
Score = 43.6 bits (98), Expect = 0.006
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDI-EGEYVPLPGDEVIYRLCPIPPKFEKFQA 413
GKI + E+G GF+K ++ D+F+HIS +G P GD V + L P K A
Sbjct: 3 GKILRWVDERGFGFIKSDELDGDVFVHISKFPQGYRRPQVGDHVEFHLANNQP---KLSA 59
Query: 414 VHVRIIHLTPEK 449
R+I + P+K
Sbjct: 60 ASARLIGVEPQK 71
>UniRef50_Q9KI38 Cluster: Ysb; n=2; Agrobacterium tumefaciens|Rep:
Ysb - Agrobacterium tumefaciens
Length = 100
Score = 43.6 bits (98), Expect = 0.006
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGEYVPL--PGDEVIY 371
+ TGK+K F K GF+ P+ GG D+FLH+S I P PG + Y
Sbjct: 1 MATGKVKWFDATKRFGFITPDDGGPDVFLHLSSITDPACPTLHPGFRLHY 50
>UniRef50_A0ACJ4 Cluster: Putative DNA-binding protein; n=3;
Actinomycetales|Rep: Putative DNA-binding protein -
Streptomyces ambofaciens ATCC 23877
Length = 172
Score = 43.6 bits (98), Expect = 0.006
Identities = 15/31 (48%), Positives = 24/31 (77%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDI 329
GKI F +G+GF+ P+ GGED+F+H++D+
Sbjct: 9 GKIIRFDEFRGYGFIAPDNGGEDVFIHVNDL 39
>UniRef50_Q2RQP4 Cluster: Cold-shock DNA-binding domain protein;
n=1; Rhodospirillum rubrum ATCC 11170|Rep: Cold-shock
DNA-binding domain protein - Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255)
Length = 70
Score = 43.2 bits (97), Expect = 0.008
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
+ TG +K F +KG GF+ P+ GG D F+HIS +E
Sbjct: 1 MTTGTVKWFNVQKGFGFIAPDDGGSDAFVHISAVE 35
>UniRef50_A6E2L2 Cluster: Cold-shock DNA-binding domain protein;
n=19; Bacteria|Rep: Cold-shock DNA-binding domain
protein - Roseovarius sp. TM1035
Length = 68
Score = 43.2 bits (97), Expect = 0.008
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
+ G +K F KG GF+ P+ GG+D+F+HIS +E
Sbjct: 1 MANGTVKWFNSTKGFGFIAPDNGGKDVFVHISAVE 35
>UniRef50_A4FKV9 Cluster: Putative DNA-binding protein; n=1;
Saccharopolyspora erythraea NRRL 2338|Rep: Putative
DNA-binding protein - Saccharopolyspora erythraea
(strain NRRL 23338)
Length = 150
Score = 43.2 bits (97), Expect = 0.008
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
++TG + F KG+GF+ P+ GGED+FLH S ++ E
Sbjct: 1 MKTGTVVRFDGIKGYGFIAPDAGGEDVFLHASILDEE 37
>UniRef50_A5BWB0 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 189
Score = 43.2 bits (97), Expect = 0.008
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +3
Query: 234 TGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
TG +K F +KG GF+ P+ GGED+F+H + I +
Sbjct: 8 TGTVKWFSGQKGFGFIAPDDGGEDLFVHQTSIRSD 42
>UniRef50_P72188 Cluster: Cold shock protein capA; n=23;
Proteobacteria|Rep: Cold shock protein capA -
Pseudomonas fragi
Length = 64
Score = 43.2 bits (97), Expect = 0.008
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +3
Query: 231 ETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
++G +K F EKG GF+ P+ GG+D+F+H IE +
Sbjct: 5 QSGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIESD 40
>UniRef50_A3J3Q2 Cluster: Cold shock protein; n=7;
Flavobacteriales|Rep: Cold shock protein - Flavobacteria
bacterium BAL38
Length = 66
Score = 42.7 bits (96), Expect = 0.010
Identities = 20/48 (41%), Positives = 30/48 (62%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGEYVPLPGDEVIY 371
+ TGK+K F KG+GF+ ++ G+DIF+H S + E + GD V Y
Sbjct: 1 MRTGKVKFFNESKGYGFITDDETGKDIFVHASGMRVESLN-EGDAVSY 47
>UniRef50_Q89E28 Cluster: Cold shock protein; n=8; cellular
organisms|Rep: Cold shock protein - Bradyrhizobium
japonicum
Length = 67
Score = 41.9 bits (94), Expect = 0.018
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
G +K F KG+GF++P GG+D+F+HIS ++
Sbjct: 5 GTVKWFNPTKGYGFIQPASGGKDVFVHISAVQ 36
>UniRef50_A7BTG1 Cluster: Cold-shock protein, DNA-binding; n=1;
Beggiatoa sp. PS|Rep: Cold-shock protein, DNA-binding -
Beggiatoa sp. PS
Length = 194
Score = 41.9 bits (94), Expect = 0.018
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI-EGEYVPLPGDEVIYRLCPIPPKFEK 404
L+ G + T+ EKG GF+ PE GED+F+HI + P GD + Y L K
Sbjct: 11 LQKGVLFTWKDEKGFGFILPENCGEDVFIHIRAFGKISRRPKEGDIIYYHLKTTSSNKGK 70
Query: 405 FQAVHVRI 428
++A + I
Sbjct: 71 YRAYNATI 78
>UniRef50_A0YBV1 Cluster: CspA-like protein; n=17;
Proteobacteria|Rep: CspA-like protein - marine gamma
proteobacterium HTCC2143
Length = 91
Score = 41.9 bits (94), Expect = 0.018
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 329
++TG +K F KG GF+ PE GG D+F H S I
Sbjct: 1 MQTGTVKWFNNAKGFGFILPEGGGADVFAHYSTI 34
>UniRef50_A0UNB6 Cluster: Cold-shock DNA-binding domain protein;
n=1; Burkholderia multivorans ATCC 17616|Rep: Cold-shock
DNA-binding domain protein - Burkholderia multivorans
ATCC 17616
Length = 193
Score = 41.9 bits (94), Expect = 0.018
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGEYVPLPGDEV 365
G +K F ++KGHGF+ E D F H+SD+ G P GD V
Sbjct: 3 GTVKWFSKDKGHGFIYGE-SAVDYFFHVSDVVGADAPREGDIV 44
>UniRef50_Q38896 Cluster: Glycine-rich protein 2b; n=26; cellular
organisms|Rep: Glycine-rich protein 2b - Arabidopsis
thaliana (Mouse-ear cress)
Length = 201
Score = 41.9 bits (94), Expect = 0.018
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 219 GNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
G G +K F +KG GF+ P GG+D+F+H S I E
Sbjct: 11 GGDRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSE 50
>UniRef50_Q6ALH9 Cluster: Hypothetical cold-shock protein; n=1;
Desulfotalea psychrophila|Rep: Hypothetical cold-shock
protein - Desulfotalea psychrophila
Length = 204
Score = 41.1 bits (92), Expect = 0.032
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHI 320
G IK + EKG+GF+ P+ GG D+FLHI
Sbjct: 4 GTIKHWNDEKGYGFITPDNGGNDVFLHI 31
>UniRef50_Q7WXG5 Cluster: Putative uncharacterized protein; n=1;
Ralstonia eutropha H16|Rep: Putative uncharacterized
protein - Ralstonia eutropha (strain ATCC 17699 / H16 /
DSM 428 / Stanier 337)(Cupriavidus necator (strain ATCC
17699 / H16 / DSM 428 / Stanier337))
Length = 191
Score = 41.1 bits (92), Expect = 0.032
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +3
Query: 231 ETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGEYV-PLPGDEVIYRLCPIPPKFEKF 407
+ G++KT+ +KG GF+ +D+F H++ ++ V P PGD V + L K +
Sbjct: 3 KAGQVKTWHADKGFGFIDVYADMKDVFFHVTALQTRAVTPTPGDRVSFELG--KGKDGRI 60
Query: 408 QAVHVRII 431
QA++V I+
Sbjct: 61 QALNVAIV 68
>UniRef50_Q4JMV8 Cluster: Predicted cold shock family protein; n=1;
uncultured bacterium BAC17H8|Rep: Predicted cold shock
family protein - uncultured bacterium BAC17H8
Length = 83
Score = 41.1 bits (92), Expect = 0.032
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGEYVP--LPGDEVIYRLCPIPPKFEKFQ 410
G +K F +KG+GF+ P++ G D+F+HI+ ++ + G V Y L + +F
Sbjct: 18 GTVKWFNTQKGYGFINPDEDGNDVFVHITAVQNSGLTGLNEGQRVSYELA--EQRNGRFA 75
Query: 411 AVHVRII 431
AV + I+
Sbjct: 76 AVDLSIV 82
>UniRef50_Q4F6X8 Cluster: Cold shock protein; n=6;
Gammaproteobacteria|Rep: Cold shock protein -
Pseudomonas fluorescens
Length = 69
Score = 41.1 bits (92), Expect = 0.032
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +3
Query: 231 ETGKIKTFCREKGHGFVKPEKGGEDIFLH 317
+TG +K F EKG GF+ P+ GG+D+F+H
Sbjct: 5 QTGTVKWFNDEKGFGFITPQGGGDDLFVH 33
>UniRef50_Q08VT0 Cluster: Conserved domain protein; n=2;
Bacteria|Rep: Conserved domain protein - Stigmatella
aurantiaca DW4/3-1
Length = 100
Score = 41.1 bits (92), Expect = 0.032
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 201 TSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLH 317
T+ R+ G + TG +K F KG GF+ + GGED+F H
Sbjct: 25 TATRSRGRNMATGTVKWFNDAKGFGFITQDGGGEDVFCH 63
>UniRef50_A1U4X1 Cluster: Putative uncharacterized protein; n=1;
Marinobacter aquaeolei VT8|Rep: Putative uncharacterized
protein - Marinobacter aquaeolei (strain ATCC 700491 /
DSM 11845 / VT8)(Marinobacter hydrocarbonoclasticus
(strain DSM 11845))
Length = 214
Score = 41.1 bits (92), Expect = 0.032
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +3
Query: 231 ETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGEYVPLPGDEVIY 371
+ G + ++ KG GF+ PE GGE +F HIS +G P +V+Y
Sbjct: 3 QKGLLTSWNDAKGFGFITPENGGERLFAHISAYQGRGRPSASRKVVY 49
>UniRef50_Q82WG3 Cluster: Cold-shock DNA-binding domain; n=5;
Bacteria|Rep: Cold-shock DNA-binding domain -
Nitrosomonas europaea
Length = 204
Score = 40.7 bits (91), Expect = 0.042
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGEYVPLPGDEVI 368
G+I T+ +KG GFV P GGE IF+HI+ G+E++
Sbjct: 5 GRITTWKDDKGFGFVTPNGGGEQIFVHINSFSSRQRRPEGNELV 48
>UniRef50_Q605X3 Cluster: Cold-shock domain family protein; n=1;
Methylococcus capsulatus|Rep: Cold-shock domain family
protein - Methylococcus capsulatus
Length = 225
Score = 40.7 bits (91), Expect = 0.042
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +3
Query: 222 NPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEG--EYVPLPGDEVIYRL 377
+P + G++ + EKG GF++P G D+F+HIS + P GD V YR+
Sbjct: 15 SPFQVGELVVWRDEKGFGFIRPFAGDHDLFIHISAFKKGMSRRPQVGDIVHYRI 68
>UniRef50_Q1GQL9 Cluster: Cold-shock DNA-binding domain protein;
n=30; Proteobacteria|Rep: Cold-shock DNA-binding domain
protein - Sphingopyxis alaskensis (Sphingomonas
alaskensis)
Length = 249
Score = 40.7 bits (91), Expect = 0.042
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
G +K F KG GFV + GGED+F+HIS +E
Sbjct: 86 GTVKFFNPSKGFGFVARDDGGEDVFVHISAVE 117
Score = 33.1 bits (72), Expect = 8.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 210 RALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
R L +G +K F KG GF+ + G D F+HIS ++
Sbjct: 174 RQLTGERTSGTVKFFNTTKGFGFIARDDGQADAFVHISAVQ 214
>UniRef50_Q0YRJ0 Cluster: Cold-shock protein, DNA-binding; n=1;
Chlorobium ferrooxidans DSM 13031|Rep: Cold-shock
protein, DNA-binding - Chlorobium ferrooxidans DSM 13031
Length = 70
Score = 40.7 bits (91), Expect = 0.042
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
GK+K F KG GF+ GGEDIF+H S+I E
Sbjct: 4 GKVKWFDVRKGFGFILNPNGGEDIFVHFSNIVSE 37
>UniRef50_Q0M3I1 Cluster: Cold-shock protein, DNA-binding; n=1;
Caulobacter sp. K31|Rep: Cold-shock protein, DNA-binding
- Caulobacter sp. K31
Length = 201
Score = 40.7 bits (91), Expect = 0.042
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 225 PLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI-EGEYVPL-PGDEVIYRLCPIP 389
P E K+K F R KG+GFV + DIF+HI + G L PGD+V+ R P
Sbjct: 132 PAERAKVKWFNRTKGYGFVVRDGQPGDIFVHIETLRRGGLEDLQPGDDVMVRFAEGP 188
>UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=6;
Alphaproteobacteria|Rep: Dead-box ATP-dependent RNA
helicase - alpha proteobacterium HTCC2255
Length = 531
Score = 40.7 bits (91), Expect = 0.042
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +3
Query: 234 TGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE--GEYVPLPGDEVIYRLCPIPPKFEKF 407
TG + + KG GF+ P++GG+D+F+H+S ++ G V GD + Y L + K K
Sbjct: 3 TGTVIWYNPVKGLGFINPDQGGDDVFVHMSALKASGLKVVKEGDMLTYELL-LDEKTGKK 61
Query: 408 QAVHVRII 431
A +V I+
Sbjct: 62 AASNVTIL 69
>UniRef50_A3BPB0 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 238
Score = 40.7 bits (91), Expect = 0.042
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE-YVPLPGDEVI 368
G +K F KG GF+ P+ GGED+F+H S ++ + Y L +V+
Sbjct: 8 GTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSDGYRSLNDGDVV 52
>UniRef50_A0CIJ2 Cluster: Chromosome undetermined scaffold_19, whole
genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_19,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 433
Score = 40.7 bits (91), Expect = 0.042
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = +3
Query: 222 NPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
NP+ TG++K F +K +GF+ ++ DIF+H+ D++
Sbjct: 342 NPIYTGRLKFFDEQKNYGFIVMDEDKSDIFVHLDDLQ 378
>UniRef50_A1CFX7 Cluster: Cold shock NA binding domain protein; n=2;
cellular organisms|Rep: Cold shock NA binding domain
protein - Aspergillus clavatus
Length = 125
Score = 40.7 bits (91), Expect = 0.042
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +3
Query: 231 ETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEG 335
+ G +K F EKG+GF+ PE GED+F+H +EG
Sbjct: 60 QNGTVKWFNDEKGYGFITPET-GEDLFVHFRAVEG 93
>UniRef50_P39818 Cluster: Cold shock-like protein cspJ; n=7;
Bacteria|Rep: Cold shock-like protein cspJ - Salmonella
typhimurium
Length = 70
Score = 40.7 bits (91), Expect = 0.042
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +3
Query: 234 TGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
TG +K F EKG GF+ P+ G +D+F+H S I+
Sbjct: 6 TGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQ 38
>UniRef50_P0A9Y2 Cluster: Cold shock protein cspA; n=39;
Gammaproteobacteria|Rep: Cold shock protein cspA -
Salmonella typhimurium
Length = 70
Score = 40.7 bits (91), Expect = 0.042
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +3
Query: 234 TGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
TG +K F +KG GF+ P+ G +D+F+H S I+ +
Sbjct: 6 TGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQND 40
>UniRef50_Q835L0 Cluster: Cold-shock domain family protein; n=24;
Bacteria|Rep: Cold-shock domain family protein -
Enterococcus faecalis (Streptococcus faecalis)
Length = 66
Score = 40.3 bits (90), Expect = 0.055
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
+ETG +K F +KG GF+ E G D+F+H S I+G+
Sbjct: 1 METGTVKWFNSDKGFGFITAE-NGNDVFVHFSAIQGD 36
>UniRef50_A7HXE8 Cluster: Putative cold-shock DNA-binding domain
protein; n=1; Parvibaculum lavamentivorans DS-1|Rep:
Putative cold-shock DNA-binding domain protein -
Parvibaculum lavamentivorans DS-1
Length = 199
Score = 40.3 bits (90), Expect = 0.055
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +3
Query: 234 TGKIKTFCREKGHGFVKPEKGGEDIFLHIS 323
TG +K F KG+GF+ PE GG+D+ +H+S
Sbjct: 39 TGVVKWFDAVKGYGFIIPENGGDDVLVHLS 68
Score = 33.5 bits (73), Expect = 6.3
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 231 ETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE--GEYVPLPGDEVIYR 374
E +K F R +G+GFV +G DIF+H+ + G LPG ++ R
Sbjct: 134 EVAIVKWFNRARGYGFVTRGEGTPDIFIHMETLRRYGIRDLLPGQQINVR 183
>UniRef50_A2SHE7 Cluster: Cold-shock DNA-binding domain; n=1;
Methylibium petroleiphilum PM1|Rep: Cold-shock
DNA-binding domain - Methylibium petroleiphilum (strain
PM1)
Length = 203
Score = 40.3 bits (90), Expect = 0.055
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDI-EGEYVPLPGDEVIYRL 377
GK+K++ E+G GF+ P GG+DIF+HI G P G V + +
Sbjct: 5 GKLKSWNDERGFGFIDPVHGGQDIFVHIKAFPSGTGRPTVGQAVTFEV 52
>UniRef50_Q83RI9 Cluster: Cold shock-like protein cspC; n=38;
Gammaproteobacteria|Rep: Cold shock-like protein cspC -
Shigella flexneri
Length = 69
Score = 40.3 bits (90), Expect = 0.055
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEG 335
G++K F KG GF+ P G +D+F+H S I+G
Sbjct: 6 GQVKWFNESKGFGFITPADGSKDVFVHFSAIQG 38
>UniRef50_P0A363 Cluster: Cold shock-like protein cspB; n=367;
root|Rep: Cold shock-like protein cspB - Yersinia
enterocolitica
Length = 70
Score = 40.3 bits (90), Expect = 0.055
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +3
Query: 234 TGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEG 335
TG +K F KG GF+ P G +D+F+H S I+G
Sbjct: 6 TGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQG 39
>UniRef50_Q11D48 Cluster: Cold-shock DNA-binding domain protein;
n=11; Proteobacteria|Rep: Cold-shock DNA-binding domain
protein - Mesorhizobium sp. (strain BNC1)
Length = 69
Score = 39.9 bits (89), Expect = 0.073
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
G +K F KG GF++P+ G D+F+HIS +E
Sbjct: 4 GTVKFFNATKGFGFIQPDDGAADVFVHISAVE 35
>UniRef50_A3X5Q6 Cluster: Putative uncharacterized protein; n=1;
Roseobacter sp. MED193|Rep: Putative uncharacterized
protein - Roseobacter sp. MED193
Length = 463
Score = 39.9 bits (89), Expect = 0.073
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGEYVPLPGDEVI 368
GKIK F +KG GF++ + ED+F HI+ ++ V E++
Sbjct: 3 GKIKAFIHDKGFGFIEVDGQSEDVFFHITTVKDSSVRCAVGEIV 46
>UniRef50_A1ZFN2 Cluster: Conserved domain protein; n=2;
Flexibacteraceae|Rep: Conserved domain protein -
Microscilla marina ATCC 23134
Length = 64
Score = 39.9 bits (89), Expect = 0.073
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGEYVPLPGDEVIY 371
+ G +K F +KG+GF+ GEDIF H+SD + + D V Y
Sbjct: 1 MNKGVVKFFKEDKGYGFITNSDTGEDIFFHVSDTQDQL--FENDNVTY 46
>UniRef50_Q75QN8 Cluster: Cold shock domain protein 3; n=2; Triticum
aestivum|Rep: Cold shock domain protein 3 - Triticum
aestivum (Wheat)
Length = 231
Score = 39.9 bits (89), Expect = 0.073
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
G +K F KG GF+ P+ GGED+F+H S I+ +
Sbjct: 7 GTVKWFNVTKGFGFISPDDGGEDLFVHQSAIKSD 40
>UniRef50_P0A975 Cluster: Cold shock-like protein cspE; n=28;
Bacteria|Rep: Cold shock-like protein cspE - Shigella
flexneri
Length = 69
Score = 39.9 bits (89), Expect = 0.073
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
G +K F KG GF+ PE G +D+F+H S I+
Sbjct: 6 GNVKWFNESKGFGFITPEDGSKDVFVHFSAIQ 37
>UniRef50_Q9ZCP9 Cluster: Cold shock-like protein cspA; n=12;
Bacteria|Rep: Cold shock-like protein cspA - Rickettsia
prowazekii
Length = 70
Score = 39.9 bits (89), Expect = 0.073
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHIS--DIEGEYVPLPGDEVIYRLCPIPPKFEKFQ 410
GK+K + K GF++ + GG+D+F+H S D G + G EVI+ I K K
Sbjct: 7 GKVKWYNSTKNFGFIEQDNGGKDVFVHKSAIDAAGLHSLEEGQEVIF---DIEEKQGKAY 63
Query: 411 AVHVRI 428
AV++R+
Sbjct: 64 AVNLRV 69
>UniRef50_Q1RHK6 Cluster: Cold shock-like protein cspA; n=2;
Rickettsia bellii RML369-C|Rep: Cold shock-like protein
cspA - Rickettsia bellii (strain RML369-C)
Length = 70
Score = 39.9 bits (89), Expect = 0.073
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHIS--DIEGEYVPLPGDEVIYRLCPIPPKFEKFQ 410
GK+K F K GF++ E GG+D+F+H S D G G +VI+ L K K
Sbjct: 7 GKVKWFNPTKNFGFIEQENGGKDVFVHRSAVDAAGLAGLNEGQDVIFDL---EDKNGKIS 63
Query: 411 AVHVRI 428
AV++RI
Sbjct: 64 AVNLRI 69
>UniRef50_A1L2L1 Cluster: LOC100036881 protein; n=1; Xenopus
laevis|Rep: LOC100036881 protein - Xenopus laevis
(African clawed frog)
Length = 131
Score = 39.5 bits (88), Expect = 0.096
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +3
Query: 234 TGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
TG K F EKG+GF+ P+ G DIF+H S I +
Sbjct: 5 TGTCKWFNAEKGYGFLTPDDGSPDIFVHQSTIHAD 39
>UniRef50_Q982F0 Cluster: Cold-shock protein; n=3; Mesorhizobium
loti|Rep: Cold-shock protein - Rhizobium loti
(Mesorhizobium loti)
Length = 97
Score = 39.5 bits (88), Expect = 0.096
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +3
Query: 153 LQLPSPIITRRNRTASTSERAL---GNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHIS 323
L++ PI + T E ++ P G +K + EKG GF+ P+ G +D+F+H S
Sbjct: 2 LEIGDPIAKTPSHTRVAGETSVETGAQPESGGTVKWYKPEKGFGFIAPDNGEKDVFVHAS 61
Query: 324 DI 329
+
Sbjct: 62 TL 63
>UniRef50_Q6ARQ9 Cluster: Hypothetical cold-shock protein; n=1;
Desulfotalea psychrophila|Rep: Hypothetical cold-shock
protein - Desulfotalea psychrophila
Length = 195
Score = 39.5 bits (88), Expect = 0.096
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHIS--DIEGEYVPLPGDEVIYRL 377
GKI+ + E+G GF+K EK + IF+HIS D P GD + Y L
Sbjct: 8 GKIEKWVGERGFGFIKSEKSAKSIFVHISAFDRAISRAPRVGDTISYCL 56
>UniRef50_Q9Z3S6 Cluster: Cold shock protein cspA; n=59;
Alphaproteobacteria|Rep: Cold shock protein cspA -
Rhizobium meliloti (Sinorhizobium meliloti)
Length = 69
Score = 39.5 bits (88), Expect = 0.096
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE--GEYVPLPGDEVIY 371
+ +G +K F KG GF++P+ G D+F+H S +E G + G +V Y
Sbjct: 1 MNSGTVKWFNSTKGFGFIQPDDGATDVFVHASAVERAGMRSLVEGQKVTY 50
>UniRef50_Q15SJ6 Cluster: Cold-shock DNA-binding domain protein;
n=5; Proteobacteria|Rep: Cold-shock DNA-binding domain
protein - Pseudoalteromonas atlantica (strain T6c /
BAA-1087)
Length = 237
Score = 39.1 bits (87), Expect = 0.13
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDI-EGEYVPLPGDEVIYRL 377
GK+ + +KG GFV+P GGE +F+HI P+ GD + Y L
Sbjct: 5 GKVFNWNDDKGFGFVEPNGGGERVFVHIKAFTPRSRRPVDGDVITYEL 52
>UniRef50_P0A981 Cluster: Cold shock-like protein cspG; n=154;
Bacteria|Rep: Cold shock-like protein cspG - Shigella
flexneri
Length = 70
Score = 39.1 bits (87), Expect = 0.13
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +3
Query: 234 TGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
TG +K F +KG GF+ P+ G +D+F+H + I+
Sbjct: 6 TGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQ 38
>UniRef50_Q1QDS0 Cluster: Cold-shock DNA-binding domain protein;
n=1; Psychrobacter cryohalolentis K5|Rep: Cold-shock
DNA-binding domain protein - Psychrobacter
cryohalolentis (strain K5)
Length = 223
Score = 38.7 bits (86), Expect = 0.17
Identities = 15/47 (31%), Positives = 30/47 (63%)
Frame = +3
Query: 231 ETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGEYVPLPGDEVIY 371
+ G++ + +KG GF++ E GE +F H+S + + P+ G+EV++
Sbjct: 9 QQGRVTKWQDDKGFGFIETE-AGESVFFHVSAFKAQRRPVIGEEVVF 54
>UniRef50_Q8KES2 Cluster: Cold shock-like protein CspG; n=9;
Chlorobiaceae|Rep: Cold shock-like protein CspG -
Chlorobium tepidum
Length = 97
Score = 38.3 bits (85), Expect = 0.22
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 240 KIKTFCREKGHGFVKPEKGGEDIFLHISDI 329
K+K F +KG+GF+ GGEDIF+H S I
Sbjct: 5 KVKWFDGKKGYGFILNPDGGEDIFVHFSSI 34
>UniRef50_Q8EIU8 Cluster: Cold shock domain family protein; n=7;
Shewanella|Rep: Cold shock domain family protein -
Shewanella oneidensis
Length = 203
Score = 38.3 bits (85), Expect = 0.22
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEK-GGEDIFLHISDIE-GEYVPLPGDEVIY 371
++ G + + EKG GF++PE+ G D+F+HIS ++ P GD ++Y
Sbjct: 3 MDRGVLVRWNEEKGFGFIQPEQSGARDVFIHISALKMMARKPKVGDSILY 52
>UniRef50_O65639 Cluster: Glycine-rich protein; n=8;
Magnoliophyta|Rep: Glycine-rich protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 299
Score = 38.3 bits (85), Expect = 0.22
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 234 TGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
TGK+ F KG+GF+ P+ G ++F+H S I E
Sbjct: 12 TGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSE 46
>UniRef50_A0DVR0 Cluster: Chromosome undetermined scaffold_66, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_66,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 360
Score = 38.3 bits (85), Expect = 0.22
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +3
Query: 231 ETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
ETGK+K F +K +GF+ + D+F+H+ D++
Sbjct: 266 ETGKLKFFDEQKSYGFIVLDSDNSDVFVHLDDLQ 299
>UniRef50_Q4FUZ6 Cluster: Possible guanine-specific ribonuclease
with a cold-shock DNA-binding domain; n=2;
Psychrobacter|Rep: Possible guanine-specific
ribonuclease with a cold-shock DNA-binding domain -
Psychrobacter arcticum
Length = 247
Score = 37.9 bits (84), Expect = 0.29
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
+++GKIK + +KG+GF+ + ED+F HI ++
Sbjct: 1 MQSGKIKHWNSDKGYGFIDVDNQSEDVFFHIKSVQ 35
>UniRef50_Q2S0T4 Cluster: Conserved domain protein; n=2;
Bacteroidetes/Chlorobi group|Rep: Conserved domain
protein - Salinibacter ruber (strain DSM 13855)
Length = 110
Score = 37.9 bits (84), Expect = 0.29
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
+ T +K F +KG+GF+ GED+F+H S+I+ +
Sbjct: 1 MRTSTVKWFDAKKGYGFIHHPDDGEDVFVHYSNIQSD 37
>UniRef50_Q2JGE4 Cluster: Cold-shock DNA-binding domain protein;
n=9; Bacteria|Rep: Cold-shock DNA-binding domain protein
- Frankia sp. (strain CcI3)
Length = 67
Score = 37.9 bits (84), Expect = 0.29
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
G +K F EKG GF+ + GG D+F+H S I+
Sbjct: 4 GTVKWFNSEKGFGFISVDGGGSDVFVHYSAIQ 35
>UniRef50_Q1ZUW9 Cluster: Predicted membrane protein; n=3;
Vibrionaceae|Rep: Predicted membrane protein - Vibrio
angustum S14
Length = 204
Score = 37.9 bits (84), Expect = 0.29
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = +3
Query: 231 ETGKIKTFCREKGHGFVKPEKGGEDIFLHIS 323
+ GKI ++ ++KG GF+ P+ G +D+F H+S
Sbjct: 3 QQGKIISWNQQKGFGFIAPDNGEQDVFFHVS 33
>UniRef50_Q1AY27 Cluster: Cold-shock DNA-binding domain protein;
n=1; Rubrobacter xylanophilus DSM 9941|Rep: Cold-shock
DNA-binding domain protein - Rubrobacter xylanophilus
(strain DSM 9941 / NBRC 16129)
Length = 69
Score = 37.9 bits (84), Expect = 0.29
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
G++K F EKG GF++ E GE++ +H ++I+GE
Sbjct: 4 GRVKWFSGEKGFGFIETE-SGEEVLVHYTEIKGE 36
>UniRef50_Q0KYJ4 Cluster: Cold-shock DNA-binding domain protein;
n=7; Shewanella|Rep: Cold-shock DNA-binding domain
protein - Shewanella baltica OS195
Length = 219
Score = 37.9 bits (84), Expect = 0.29
Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEK-GGEDIFLHISDIEG-EYVPLPGDEVIYR 374
++ G + + EKG GF++PEK +D+F+HIS ++ P+ GD ++++
Sbjct: 3 MDRGVLVRWNDEKGFGFIQPEKNAAQDVFIHISVLKKMARKPIVGDSILFQ 53
>UniRef50_Q0BPU3 Cluster: Cold shock protein; n=1; Granulibacter
bethesdensis CGDNIH1|Rep: Cold shock protein -
Granulobacter bethesdensis (strain ATCC BAA-1260 /
CGDNIH1)
Length = 100
Score = 37.9 bits (84), Expect = 0.29
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
G +K F KG+GF+ P G +D+F+HIS ++
Sbjct: 35 GTVKWFNPTKGYGFIAPSTGEKDVFVHISAVQ 66
>UniRef50_A5ZXC4 Cluster: Putative uncharacterized protein; n=2;
cellular organisms|Rep: Putative uncharacterized protein
- Ruminococcus obeum ATCC 29174
Length = 66
Score = 37.9 bits (84), Expect = 0.29
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
+ G +K F EKG+GF+ E G D+F+H S I GE
Sbjct: 1 MNKGTVKWFNAEKGYGFITGEDGA-DVFVHFSAINGE 36
>UniRef50_A4KQU6 Cluster: Cold shock protein; n=7; Francisella
tularensis|Rep: Cold shock protein - Francisella
tularensis subsp. holarctica 257
Length = 143
Score = 37.9 bits (84), Expect = 0.29
Identities = 20/71 (28%), Positives = 40/71 (56%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGEYVPLPGDEVIYRLCPIPPKFEKFQAV 416
G +K + ++KG+GF+ E+ +D F I+D + VP D+V + + K EK A+
Sbjct: 3 GIVKFYNKDKGYGFIYSEESEKDFFFSINDWKNPTVPNGSDDVEFEVAQ-SKKGEK--AI 59
Query: 417 HVRIIHLTPEK 449
+++++ +K
Sbjct: 60 NIKLLKSAEDK 70
>UniRef50_A2UVR3 Cluster: Cold-shock DNA-binding domain protein;
n=1; Shewanella putrefaciens 200|Rep: Cold-shock
DNA-binding domain protein - Shewanella putrefaciens 200
Length = 149
Score = 37.9 bits (84), Expect = 0.29
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGEYVPLPGDEVIYRLCPIP 389
G +K F +G GF+ G D + H+SD+ G +P GD+V + P
Sbjct: 5 GVVKWFSVPQGFGFITSITEGTDHYFHVSDVIGSALPEIGDKVTFETISTP 55
>UniRef50_P39158 Cluster: Cold shock protein cspC; n=41;
Bacteria|Rep: Cold shock protein cspC - Bacillus
subtilis
Length = 66
Score = 37.9 bits (84), Expect = 0.29
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
+E G +K F EKG GF++ E G+D+F+H S I+ +
Sbjct: 1 MEQGTVKWFNAEKGFGFIERE-NGDDVFVHFSAIQSD 36
>UniRef50_Q9S1B7 Cluster: Cold shock-like protein cspA; n=10;
Bacteria|Rep: Cold shock-like protein cspA - Shewanella
violacea
Length = 70
Score = 37.9 bits (84), Expect = 0.29
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 234 TGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
TG +K F +KG GF+ + GG D+F+H I E
Sbjct: 6 TGTVKWFNEDKGFGFLTQDNGGADVFVHFRAIASE 40
>UniRef50_Q5ZWM5 Cluster: Cold shock domain family protein; n=6;
Bacteria|Rep: Cold shock domain family protein -
Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 /ATCC 33152 / DSM 7513)
Length = 87
Score = 37.5 bits (83), Expect = 0.39
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE-YVPLP-GDEVIYRL 377
GK+K F ++KG GF+ E G+D F+H S I+ + LP G V++++
Sbjct: 21 GKVKWFNKDKGFGFI--ESSGKDYFVHFSSIQSNGFKTLPDGATVLFKM 67
>UniRef50_Q2J4H7 Cluster: Cold-shock DNA-binding domain protein;
n=13; Bacteria|Rep: Cold-shock DNA-binding domain
protein - Frankia sp. (strain CcI3)
Length = 67
Score = 37.5 bits (83), Expect = 0.39
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDI 329
G +K F EKG GF+ + GG D+F+H S I
Sbjct: 4 GTVKWFNAEKGFGFISVDGGGPDVFVHYSSI 34
>UniRef50_Q1YTJ3 Cluster: Cold shock protein; n=1; gamma
proteobacterium HTCC2207|Rep: Cold shock protein - gamma
proteobacterium HTCC2207
Length = 89
Score = 37.5 bits (83), Expect = 0.39
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +3
Query: 231 ETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 329
+TG++K F ++G GF++P+ G ++F H +I
Sbjct: 3 DTGRVKWFSNDRGFGFIEPDNGERELFAHHQNI 35
>UniRef50_A7RV03 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 671
Score = 37.5 bits (83), Expect = 0.39
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +3
Query: 234 TGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
TG +K F KG GF+ + GGED+F+H S I+
Sbjct: 484 TGSVKWFNLIKGFGFITRDDGGEDVFVHQSAIK 516
>UniRef50_Q9VRN5 Cluster: Lin-28 homolog; n=1; Drosophila
melanogaster|Rep: Lin-28 homolog - Drosophila
melanogaster (Fruit fly)
Length = 195
Score = 37.5 bits (83), Expect = 0.39
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Frame = +3
Query: 177 TRRNRTASTSERALGNPLET------GKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
T ++ T+S + L +P E GK K F KG GF+ P GG+++F+H S I+
Sbjct: 15 TSQSSTSSANPANLASPTEECGCVRLGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQ 72
>UniRef50_Q5XG60 Cluster: LOC443686 protein; n=2; Xenopus
laevis|Rep: LOC443686 protein - Xenopus laevis (African
clawed frog)
Length = 1134
Score = 37.1 bits (82), Expect = 0.51
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +3
Query: 72 DYQSNLLIMSNDYGFNSDDSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLETGKIKT 251
DY+ NL + ++ DD N S PSP+ +N + ST+ ++ +PL I+
Sbjct: 512 DYKLNLDPLPDERAVYIDDEINSLPSSPMAPSPLPAEKNTSESTANFSMDHPLVLSNIRQ 571
Query: 252 FCREK 266
REK
Sbjct: 572 SLREK 576
>UniRef50_Q1ZDW9 Cluster: Cold-shock DNA-binding domain protein;
n=1; Psychromonas sp. CNPT3|Rep: Cold-shock DNA-binding
domain protein - Psychromonas sp. CNPT3
Length = 208
Score = 37.1 bits (82), Expect = 0.51
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIE-GEYVPLPGDEVIYRLCPIPPKFEKFQA 413
GKI + +KG GFV GG F+HI + P+ GD + Y L + +++QA
Sbjct: 5 GKILNWNDDKGFGFVVSNAGGVSAFVHIKSFQVNARRPVNGDVITYEL--VQGNDQRYQA 62
Query: 414 VHVRIIH 434
V+ ++
Sbjct: 63 KQVKFLN 69
>UniRef50_Q1K0A5 Cluster: Cold-shock DNA-binding domain protein;
n=1; Desulfuromonas acetoxidans DSM 684|Rep: Cold-shock
DNA-binding domain protein - Desulfuromonas acetoxidans
DSM 684
Length = 214
Score = 37.1 bits (82), Expect = 0.51
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGEY 341
G I ++ ++KG+GF+ P G + IF+HI D +
Sbjct: 12 GTITSWNKDKGYGFILPNSGSKQIFVHIKDFSNRH 46
>UniRef50_A7BYF1 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. PS|Rep: Putative uncharacterized protein -
Beggiatoa sp. PS
Length = 189
Score = 37.1 bits (82), Expect = 0.51
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGEYVPLPGDEV 365
G + F +++G GF++ +K ED+F+H+ +I + PG +V
Sbjct: 3 GIVVKFDKKRGFGFIRSDKFSEDVFVHLKNIREQQSLSPGQKV 45
>UniRef50_A3Y9L0 Cluster: Cold-shock DNA-binding domain protein;
n=2; Marinomonas|Rep: Cold-shock DNA-binding domain
protein - Marinomonas sp. MED121
Length = 97
Score = 37.1 bits (82), Expect = 0.51
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 186 NRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEG 335
N E + L +G +K F EKG GF++ E GG D+F+H I G
Sbjct: 18 NTVDRKDEVCMSGQLVSGIVKWFNDEKGFGFIERE-GGPDVFVHFRAING 66
>UniRef50_P54584 Cluster: Cold shock protein; n=6; Bacteria|Rep:
Cold shock protein - Arthrobacter globiformis
Length = 67
Score = 37.1 bits (82), Expect = 0.51
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
G +K F EKG GF+ P+ D+F+H S+I+
Sbjct: 4 GTVKWFNAEKGFGFITPDDSDGDVFVHYSEIQ 35
>UniRef50_P72366 Cluster: Cold shock-like protein cspA; n=29;
Bacteria|Rep: Cold shock-like protein cspA - Stigmatella
aurantiaca
Length = 68
Score = 37.1 bits (82), Expect = 0.51
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 329
+ TG +K F KG GF+ + GGED+F H S I
Sbjct: 1 MATGTVKWFNDAKGFGFITQDGGGEDVFCHHSAI 34
>UniRef50_Q9KXN2 Cluster: Cold shock protein B; n=7; Bacteria|Rep:
Cold shock protein B - Streptomyces coelicolor
Length = 127
Score = 36.7 bits (81), Expect = 0.68
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGEYVPL-PGDEV 365
+ TGK+K F EKG GF+ + GG D+F+H S + L PG V
Sbjct: 1 MPTGKVKWFNSEKGFGFLSRDDGG-DVFVHSSVLPAGVESLKPGQRV 46
>UniRef50_Q6N6T9 Cluster: Cold shock DNA binding protein; n=38;
Alphaproteobacteria|Rep: Cold shock DNA binding protein
- Rhodopseudomonas palustris
Length = 235
Score = 36.7 bits (81), Expect = 0.68
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +3
Query: 189 RTASTSERALGNPLE-TGKIKTFCREKGHGFVKPEKGGEDIFLHISDI--EGEYVPLPGD 359
R A T N +E +G IK F KG+GFV P+ G D+ LH++ + +G G
Sbjct: 54 RDAFTGLGEAANLVEISGVIKWFDASKGYGFVVPDNGWPDVLLHVTVLRRDGYQTAYEGA 113
Query: 360 EVIYRLCPIPPKFEKFQAV 416
++ ++ F+ V
Sbjct: 114 RIVVECVQRAKGYQAFRIV 132
Score = 33.1 bits (72), Expect = 8.4
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE--GEYVPLPGDEVIYRLCP 383
LE ++K F R +G GF+ +G DIF+H+ + G PG V+ R P
Sbjct: 160 LERAQVKWFNRLRGFGFLTCGEGTPDIFVHMETLRRYGMTELRPGQYVLVRFGP 213
>UniRef50_A4RZ32 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 106
Score = 36.7 bits (81), Expect = 0.68
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIE--GEYVPLPGDEVIY 371
GK+K F KG GF+ P G E+IF+H + I G G+EV Y
Sbjct: 7 GKVKWFNATKGFGFIIPHDGSEEIFVHQTGISCAGFRSVWEGEEVEY 53
>UniRef50_Q5CVY2 Cluster: Cold shock RNA binding domain of the OB
fold; n=2; Cryptosporidium|Rep: Cold shock RNA binding
domain of the OB fold - Cryptosporidium parvum Iowa II
Length = 135
Score = 36.7 bits (81), Expect = 0.68
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 234 TGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
+G K F KG GF+ P+ G EDIF+H +I+ E
Sbjct: 12 SGVCKWFDSTKGFGFITPDDGSEDIFVHQQNIKVE 46
>UniRef50_UPI00015BD510 Cluster: UPI00015BD510 related cluster; n=1;
unknown|Rep: UPI00015BD510 UniRef100 entry - unknown
Length = 86
Score = 36.3 bits (80), Expect = 0.90
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 234 TGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
TG +K F +EKG+GF+ + D+F+H S I+
Sbjct: 19 TGTVKWFSKEKGYGFLTRDDNQGDVFVHFSAID 51
>UniRef50_Q8D046 Cluster: Cold shock protein; n=14;
Enterobacteriaceae|Rep: Cold shock protein - Yersinia
pestis
Length = 77
Score = 36.3 bits (80), Expect = 0.90
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +3
Query: 204 SERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLH 317
S+R L+ G++K F + +G+GF+ P GG D++++
Sbjct: 3 SKRKFIMTLKMGRVKWFNQSEGYGFISPHDGGSDVYVN 40
>UniRef50_Q1N1Z0 Cluster: Cold shock protein; n=14; Bacteria|Rep:
Cold shock protein - Oceanobacter sp. RED65
Length = 171
Score = 36.3 bits (80), Expect = 0.90
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 180 RRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEG 335
+R T + E + + E G +K F +KG GF+ + GED+F+H I G
Sbjct: 89 KRRGTGTLIENDVDDGRERGLVKWFNVKKGFGFITRD-NGEDVFVHFRSIRG 139
>UniRef50_Q1GT29 Cluster: Cold-shock DNA-binding domain protein;
n=1; Sphingopyxis alaskensis|Rep: Cold-shock DNA-binding
domain protein - Sphingopyxis alaskensis (Sphingomonas
alaskensis)
Length = 90
Score = 36.3 bits (80), Expect = 0.90
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 219 GNPLET-GKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
GN L G +K F +KG+GF++ E G D F+HI+ ++
Sbjct: 19 GNTLMAIGTVKFFNNDKGYGFIENEDGSGDSFVHITAVQ 57
>UniRef50_Q03EZ0 Cluster: Cold shock protein; n=1; Pediococcus
pentosaceus ATCC 25745|Rep: Cold shock protein -
Pediococcus pentosaceus (strain ATCC 25745 / 183-1w)
Length = 69
Score = 36.3 bits (80), Expect = 0.90
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE-YVPLPGDEVIYRLCPIPPK 395
+ETG +++F +EKG+GF++ G+ +F H + I+ E Y L E + + PK
Sbjct: 1 METGTVESFDKEKGYGFIE-TASGDKVFAHYTVIQSEDYKTLEVGEKVKLMLADGPK 56
>UniRef50_A1GFH1 Cluster: Cold-shock DNA-binding domain protein;
n=2; Salinispora|Rep: Cold-shock DNA-binding domain
protein - Salinispora arenicola CNS205
Length = 139
Score = 36.3 bits (80), Expect = 0.90
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISD 326
+E G I F +G+GF+ P GG+D+F+H +D
Sbjct: 2 VEKGTIVRFDDVRGYGFIAPFGGGDDVFVHAND 34
>UniRef50_Q5JKD6 Cluster: Cold shock domain protein 2-like protein;
n=3; Oryza sativa|Rep: Cold shock domain protein 2-like
protein - Oryza sativa subsp. japonica (Rice)
Length = 221
Score = 36.3 bits (80), Expect = 0.90
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE-YVPLPGDEVI 368
G +K F G F+ P+ G ED+F+H S ++ + Y L D+VI
Sbjct: 8 GMVKGFDATNGFSFITPDDGSEDLFIHQSSLKFDGYRSLNDDDVI 52
>UniRef50_A3X259 Cluster: Cold shock protein; n=1; Nitrobacter sp.
Nb-311A|Rep: Cold shock protein - Nitrobacter sp.
Nb-311A
Length = 62
Score = 35.9 bits (79), Expect = 1.2
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +3
Query: 258 REKGHGFVKPEKGGEDIFLHISDIE 332
R +G F++PE GG+D+F+HIS +E
Sbjct: 4 RAEGLRFIEPESGGKDVFVHISAVE 28
>UniRef50_Q23960 Cluster: Y-box protein; n=2; Dugesia|Rep: Y-box
protein - Dugesia japonica (Planarian)
Length = 266
Score = 35.9 bits (79), Expect = 1.2
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +3
Query: 186 NRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 329
N S+ ++ L + TGK+K F ++G+GFV EDIF+H S I
Sbjct: 14 NAADSSKQKQLLHTGITGKVKWFNVKRGYGFVCRNDNQEDIFIHQSAI 61
>UniRef50_A2E698 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 551
Score = 35.9 bits (79), Expect = 1.2
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 303 DIFLHISDIEGEYVPLPGDEVIYRLCP-IPPKFEKFQAVHVRIIHLTPEKHVKWDEPPL 476
D+F I + E E+ P+P + +L P PP F VH ++ +K ++WD P L
Sbjct: 408 DVFNEIIEEENEFTPIP--PFVLKLLPKSPPNSLDFDTVH-SMLEFISQKEIEWDYPDL 463
>UniRef50_Q9HSS3 Cluster: Cold shock protein; n=7;
Halobacteriaceae|Rep: Cold shock protein - Halobacterium
salinarium (Halobacterium halobium)
Length = 74
Score = 35.9 bits (79), Expect = 1.2
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEG 335
+ TG++ F G+GF++ E ED+F H+ D+ G
Sbjct: 11 MATGEVDFFNDTGGYGFIETEDADEDVFFHMEDVGG 46
>UniRef50_Q9I0L6 Cluster: Cold-shock protein CspD; n=12;
Gammaproteobacteria|Rep: Cold-shock protein CspD -
Pseudomonas aeruginosa
Length = 90
Score = 35.5 bits (78), Expect = 1.6
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 234 TGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
+GK+K F KG+GF+ E ED+F H S I+
Sbjct: 3 SGKVKWFNNAKGYGFILAEGRDEDLFAHYSAIQ 35
>UniRef50_Q88Q61 Cluster: Cold shock DNA-binding domain protein;
n=1; Pseudomonas putida KT2440|Rep: Cold shock
DNA-binding domain protein - Pseudomonas putida (strain
KT2440)
Length = 246
Score = 35.5 bits (78), Expect = 1.6
Identities = 23/81 (28%), Positives = 41/81 (50%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGEYVPLPGDEVIYRLCPIPPKFEKF 407
L +G +++F EKG GF++ + G F+HI ++EG + G V + P P + +
Sbjct: 11 LTSGVVRSFMPEKGFGFIQGD-DGRSYFVHIKNVEGGEL-FDGQSVAFEGQPGP---KGY 65
Query: 408 QAVHVRIIHLTPEKHVKWDEP 470
+AV V+ P ++ P
Sbjct: 66 RAVKVKPGERPPPPGYAYESP 86
>UniRef50_Q2RNN9 Cluster: Cold-shock DNA-binding domain protein;
n=1; Rhodospirillum rubrum ATCC 11170|Rep: Cold-shock
DNA-binding domain protein - Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255)
Length = 210
Score = 35.5 bits (78), Expect = 1.6
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 234 TGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE-GEYVPLP-GDEVIYRLCP 383
T +K F KG GFV+ G D FLHIS ++ Y LP G ++ L P
Sbjct: 6 TATVKWFNATKGFGFVRVSDGEPDAFLHISVLQRAGYSELPEGATIVCDLAP 57
Score = 33.5 bits (73), Expect = 6.3
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFL 314
G +K F +KG GFV P+ GG+D+++
Sbjct: 147 GVVKFFSADKGFGFVVPDGGGKDVYV 172
>UniRef50_Q127M7 Cluster: Cold-shock DNA-binding domain protein;
n=1; Polaromonas sp. JS666|Rep: Cold-shock DNA-binding
domain protein - Polaromonas sp. (strain JS666 / ATCC
BAA-500)
Length = 193
Score = 35.5 bits (78), Expect = 1.6
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE-YVPLPGDEVIYRLCP 383
G +K + E+G GF+ ++GG++IF+HIS + +P G+ + + + P
Sbjct: 10 GTLKKWNAERGLGFIVADQGGQEIFVHISAFPRDGRLPAVGEPLSFEVEP 59
>UniRef50_P62169 Cluster: Cold shock-like protein cspC; n=26;
cellular organisms|Rep: Cold shock-like protein cspC -
Bacillus anthracis
Length = 65
Score = 35.5 bits (78), Expect = 1.6
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
G++K F EKG GF++ E G+D+F+H S I+
Sbjct: 3 GRVKWFNAEKGFGFIERE-DGDDVFVHFSAIQ 33
>UniRef50_Q3Y013 Cluster: Cold-shock protein, DNA-binding; n=6;
cellular organisms|Rep: Cold-shock protein, DNA-binding
- Enterococcus faecium DO
Length = 35
Score = 35.1 bits (77), Expect = 2.1
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 329
+E G +K F EKG GF+ E G D+F+H S I
Sbjct: 1 MENGTVKWFNAEKGFGFISRE-DGSDVFVHFSAI 33
>UniRef50_Q1GHI4 Cluster: Cold-shock DNA-binding domain protein;
n=19; Rhodobacterales|Rep: Cold-shock DNA-binding domain
protein - Silicibacter sp. (strain TM1040)
Length = 179
Score = 35.1 bits (77), Expect = 2.1
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 195 ASTSERALGN-PLETGKIKTFCREKGHGFVKPEKGGEDIFLHI 320
A + L N PLE ++K F + KG GF ED+FLH+
Sbjct: 91 AQLDDEELSNTPLEPARVKWFDKAKGFGFANVFGRDEDVFLHV 133
>UniRef50_Q12K82 Cluster: Putative uncharacterized protein; n=1;
Shewanella denitrificans OS217|Rep: Putative
uncharacterized protein - Shewanella denitrificans
(strain OS217 / ATCC BAA-1090 / DSM 15013)
Length = 196
Score = 35.1 bits (77), Expect = 2.1
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDI-EGEYVPLPGDEVIYRL 377
GK+ + +KG GF++P G ++FLHIS + P D + Y L
Sbjct: 5 GKLVRWDDDKGFGFIRPNLTGPEVFLHISALRNASRRPQEDDVITYAL 52
>UniRef50_A5NZH6 Cluster: Putative cold-shock DNA-binding domain
protein precursor; n=1; Methylobacterium sp. 4-46|Rep:
Putative cold-shock DNA-binding domain protein precursor
- Methylobacterium sp. 4-46
Length = 242
Score = 35.1 bits (77), Expect = 2.1
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 225 PLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE--GEYVPLPG 356
P +K F +EKG GFV+ G D FLHI +E G LPG
Sbjct: 60 PERDATVKWFNKEKGFGFVELGDGSGDAFLHIRAVEAAGHADLLPG 105
>UniRef50_A3YG84 Cluster: Cold-shock protein CspD; n=1; Marinomonas
sp. MED121|Rep: Cold-shock protein CspD - Marinomonas
sp. MED121
Length = 92
Score = 35.1 bits (77), Expect = 2.1
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISD--IEGEYVPLPGDEVIYRLCP 383
G +K F KG+GF+ E ED+F+H S I+G G V ++ P
Sbjct: 4 GTVKWFNNAKGYGFIVSESFEEDLFIHYSSILIDGYKTLKAGQSVSFKTSP 54
>UniRef50_Q016S2 Cluster: Putative nucleic acid binding protein;
n=1; Ostreococcus tauri|Rep: Putative nucleic acid
binding protein - Ostreococcus tauri
Length = 125
Score = 35.1 bits (77), Expect = 2.1
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDI--------EGEYVPLPGDEVIYRLCPIPP 392
GK+K F KG G++ P+ G D+F+H S + +G GD V + + P
Sbjct: 13 GKVKWFNCTKGFGYITPDDGEPDVFVHQSALKMEGFRRTDGRRFATQGDSVEFDVEHESP 72
Query: 393 KFEKFQAVHVRIIHLTPEK 449
E+ +AV V I P K
Sbjct: 73 TDERLKAVCVTGIGGAPLK 91
>UniRef50_P0A985 Cluster: Cold shock-like protein cspH; n=24;
Enterobacteriaceae|Rep: Cold shock-like protein cspH -
Shigella flexneri
Length = 70
Score = 35.1 bits (77), Expect = 2.1
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 234 TGKIKTFCREKGHGFVKPEKGGEDIFLHIS 323
TG +KTF R+ G GF+ P G +++ +HIS
Sbjct: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHIS 35
>UniRef50_Q5L9T7 Cluster: Cold shock-like protein; n=2; Bacteroides
fragilis|Rep: Cold shock-like protein - Bacteroides
fragilis (strain ATCC 25285 / NCTC 9343)
Length = 69
Score = 34.7 bits (76), Expect = 2.7
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGEYVPLPGDEVIYRL 377
G+I+ F KG+GFVK GE F HIS GD V + +
Sbjct: 8 GRIEYFNAAKGYGFVKDADNGEKYFFHISSAPATIA--EGDRVTFEI 52
>UniRef50_Q9ZFK9 Cluster: CspA; n=25; Bacteria|Rep: CspA -
Myxococcus xanthus
Length = 68
Score = 34.7 bits (76), Expect = 2.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
+ TG +K F KG GF+ + GG D+F H + I+
Sbjct: 1 MATGTVKWFNDAKGFGFIAQDDGGADVFCHHTAIQ 35
>UniRef50_Q8GI47 Cluster: Cold shock protein homolog; n=5;
Deinococci|Rep: Cold shock protein homolog - Thermus
thermophilus
Length = 73
Score = 34.7 bits (76), Expect = 2.7
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
++ G++K F EKG+GF++ E G D+F+H + I +
Sbjct: 1 MQKGRVKWFNAEKGYGFIERE-GDTDVFVHYTAINAK 36
>UniRef50_Q1QAP9 Cluster: Cold-shock DNA-binding domain protein;
n=5; cellular organisms|Rep: Cold-shock DNA-binding
domain protein - Psychrobacter cryohalolentis (strain
K5)
Length = 71
Score = 34.7 bits (76), Expect = 2.7
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 231 ETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
E G +K F KG GF++ + G EDIF+H I+G+
Sbjct: 5 EQGIVKWFNDSKGFGFIQRDSG-EDIFVHFRAIQGD 39
>UniRef50_A6C742 Cluster: Cold-shock DNA-binding domain; n=1;
Planctomyces maris DSM 8797|Rep: Cold-shock DNA-binding
domain - Planctomyces maris DSM 8797
Length = 195
Score = 34.7 bits (76), Expect = 2.7
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE-YVPLPGDEVIY 371
GKI + EKG GF+ + +F+HIS G P GD V Y
Sbjct: 5 GKITDWDDEKGFGFISSQNDDSSVFVHISAFSGSARRPQAGDPVSY 50
>UniRef50_A3XVA6 Cluster: Putative uncharacterized protein; n=1;
Vibrio sp. MED222|Rep: Putative uncharacterized protein
- Vibrio sp. MED222
Length = 84
Score = 34.7 bits (76), Expect = 2.7
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
G I F E G GF KP+ G D+ +HIS IE
Sbjct: 9 GYITWFHLENGFGFAKPDHGDIDVLIHISVIE 40
>UniRef50_A2TNS0 Cluster: Cold shock protein; n=4;
Bacteroidetes|Rep: Cold shock protein - Dokdonia
donghaensis MED134
Length = 82
Score = 34.7 bits (76), Expect = 2.7
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEG 335
GK+K F +KG GF+ + E++F+H +++ G
Sbjct: 21 GKVKFFNTKKGFGFIAIDNSDEEVFVHTTNVTG 53
>UniRef50_Q7RCZ7 Cluster: Putative uncharacterized protein PY05629;
n=1; Plasmodium yoelii yoelii|Rep: Putative
uncharacterized protein PY05629 - Plasmodium yoelii
yoelii
Length = 440
Score = 34.7 bits (76), Expect = 2.7
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +1
Query: 223 IHWKLVKSRRSAERKVTDL*NLKKGAKIYF-SIYLISKVNMYPCLVM-KLYIDF 378
I WKL ++ +K+ +L LKK A+I+F +YL +K + LVM K++I F
Sbjct: 73 IKWKLFVEKKKKYKKMENLIKLKKMARIFFIFLYLRAKTSYKQILVMYKIFILF 126
>UniRef50_Q2LZN5 Cluster: GA14466-PA; n=3; Endopterygota|Rep:
GA14466-PA - Drosophila pseudoobscura (Fruit fly)
Length = 168
Score = 34.7 bits (76), Expect = 2.7
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
GK K F KG GF+ P GG+++F+H S I+
Sbjct: 23 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIK 54
>UniRef50_Q60AQ4 Cluster: Cold shock protein; n=27; Bacteria|Rep:
Cold shock protein - Methylococcus capsulatus
Length = 69
Score = 34.3 bits (75), Expect = 3.6
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 231 ETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
+ G +K F KG GF++ E G D+F+H I+G+
Sbjct: 5 QQGTVKWFNESKGFGFIQRENGS-DLFVHFRSIQGQ 39
>UniRef50_O53689 Cluster: POSSIBLE CONSERVED MEMBRANE PROTEIN; n=17;
Mycobacterium|Rep: POSSIBLE CONSERVED MEMBRANE PROTEIN -
Mycobacterium tuberculosis
Length = 1330
Score = 34.3 bits (75), Expect = 3.6
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 87 LLIMSNDYGFNSDDSPNKTNS-HLQLPSPIITRRNRTASTSERALGNPLETGKIK 248
LL + D G + T S HL + SP++ R N +T+ GNP ++GKI+
Sbjct: 1229 LLAQAGDLGLRVIVTGRATGSAHLLMTSPLLRRFNDLQATTLMLAGNPADSGKIR 1283
>UniRef50_A4SJX6 Cluster: Cold-shock protein, DNA-binding; n=2;
Aeromonas|Rep: Cold-shock protein, DNA-binding -
Aeromonas salmonicida (strain A449)
Length = 219
Score = 34.3 bits (75), Expect = 3.6
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 6/53 (11%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPE-KGGE----DIFLHISDIEGE-YVPLPGDEVIYRL 377
G+I ++ +G GF+ PE +GGE ++F+HIS ++ + +P G+ V Y+L
Sbjct: 5 GRIASWNEARGFGFITPEQEGGEQQGSELFVHISALQSDGSLPNVGERVSYQL 57
>UniRef50_A3VSH0 Cluster: Cold shock protein; n=1; Parvularcula
bermudensis HTCC2503|Rep: Cold shock protein -
Parvularcula bermudensis HTCC2503
Length = 173
Score = 34.3 bits (75), Expect = 3.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHIS 323
G +K F + KG+GF+ E GG D+ +H S
Sbjct: 16 GFVKWFDQTKGYGFITDEAGGRDVLIHSS 44
>UniRef50_A3UBK6 Cluster: Cold-shock DNA-binding domain protein;
n=8; Bacteroidetes|Rep: Cold-shock DNA-binding domain
protein - Croceibacter atlanticus HTCC2559
Length = 64
Score = 34.3 bits (75), Expect = 3.6
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
++TG +K F KG GF+K E E+ F+H++ + E
Sbjct: 1 MQTGTVKFFNDTKGFGFIKEEGTNEEHFVHVTGLIDE 37
>UniRef50_A3S070 Cluster: Cold shock protein; n=1; Ralstonia
solanacearum UW551|Rep: Cold shock protein - Ralstonia
solanacearum UW551
Length = 82
Score = 34.3 bits (75), Expect = 3.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIF 311
+ TG +K F KG GF+ P+ GG D+F
Sbjct: 43 MATGTVKWFNETKGFGFITPDGGGADLF 70
>UniRef50_Q48H64 Cluster: Cold shock domain protein CspD; n=7;
Proteobacteria|Rep: Cold shock domain protein CspD -
Pseudomonas syringae pv. phaseolicola (strain 1448A /
Race 6)
Length = 94
Score = 33.9 bits (74), Expect = 4.8
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 237 GKIKTFCREKGHGF-VKPEKGGEDIFLHISDIEGE 338
GK+K F KG+GF +K K +D+F H S I+ E
Sbjct: 6 GKVKWFNNAKGYGFIIKDGKPDDDLFAHFSTIQME 40
>UniRef50_Q28PH1 Cluster: Cold-shock DNA-binding domain protein;
n=6; Rhodobacterales|Rep: Cold-shock DNA-binding domain
protein - Jannaschia sp. (strain CCS1)
Length = 181
Score = 33.9 bits (74), Expect = 4.8
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +3
Query: 225 PLETGKIKTFCREKGHGFVKPEKGGEDIFLH 317
P G +K F KG GFV ++GG DI LH
Sbjct: 20 PTVAGVVKWFDTTKGFGFVLSDEGGPDILLH 50
>UniRef50_Q0I3L0 Cluster: Cold shock-like protein; n=2;
Proteobacteria|Rep: Cold shock-like protein -
Haemophilus somnus (strain 129Pt) (Histophilus somni
(strain 129Pt))
Length = 69
Score = 33.9 bits (74), Expect = 4.8
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 228 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
+E G +K F KG GF+ E D+F H S IE E
Sbjct: 1 MEVGIVKWFNNAKGFGFLSVESSDVDVFAHYSVIEME 37
>UniRef50_A4VMZ2 Cluster: Cold shock protein CspA; n=12;
Bacteria|Rep: Cold shock protein CspA - Pseudomonas
stutzeri (strain A1501)
Length = 136
Score = 33.9 bits (74), Expect = 4.8
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 231 ETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
ETG +K F KG+GF++ G D+F+H I G+
Sbjct: 72 ETGTVKWFNDAKGYGFIQ-RGNGADVFVHYRAIRGD 106
>UniRef50_A4LXQ2 Cluster: Cold-shock DNA-binding domain protein;
n=1; Geobacter bemidjiensis Bem|Rep: Cold-shock
DNA-binding domain protein - Geobacter bemidjiensis Bem
Length = 92
Score = 33.9 bits (74), Expect = 4.8
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +3
Query: 195 ASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
A+ E+ + N G +K F KG GF++ + G D+F+H S I+G+
Sbjct: 20 AAKGEKVMAN----GVVKWFNDAKGFGFIEQDNG-VDVFVHFSSIQGD 62
>UniRef50_A0D610 Cluster: Chromosome undetermined scaffold_39, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_39,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 178
Score = 33.9 bits (74), Expect = 4.8
Identities = 22/103 (21%), Positives = 50/103 (48%)
Frame = +3
Query: 99 SNDYGFNSDDSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHGF 278
S+DY + P + L + +P I ++ + L + G++K + K +GF
Sbjct: 46 SDDYQLLKQNPPG-VSLKLNIGTPKIETPSKLPYVLDDTLQR--QKGRMKFYDDAKKYGF 102
Query: 279 VKPEKGGEDIFLHISDIEGEYVPLPGDEVIYRLCPIPPKFEKF 407
+ ++ G D+F+H D++ + + + +Y++ P++ KF
Sbjct: 103 LVLDEDGTDVFVHYDDLQAAGITIEKMK-LYKIIRNNPQYVKF 144
>UniRef50_Q74BX3 Cluster: Cold shock domain family protein; n=13;
cellular organisms|Rep: Cold shock domain family protein
- Geobacter sulfurreducens
Length = 66
Score = 33.5 bits (73), Expect = 6.3
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
G++K F KG GF++ + G ED+F+H S I+
Sbjct: 4 GRVKWFNDAKGFGFIEQDNG-EDVFVHFSAIQ 34
>UniRef50_Q013V8 Cluster: Glycogen debranching enzyme; n=1;
Ostreococcus tauri|Rep: Glycogen debranching enzyme -
Ostreococcus tauri
Length = 141
Score = 33.5 bits (73), Expect = 6.3
Identities = 10/23 (43%), Positives = 19/23 (82%)
Frame = +3
Query: 264 KGHGFVKPEKGGEDIFLHISDIE 332
+G+G+V+P G ED+F+H S+++
Sbjct: 51 RGYGYVRPHDGSEDVFVHQSELQ 73
>UniRef50_P92186 Cluster: Protein lin-28; n=5; Caenorhabditis|Rep:
Protein lin-28 - Caenorhabditis elegans
Length = 227
Score = 33.5 bits (73), Expect = 6.3
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3
Query: 174 ITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 329
+T R S P G K F KG+GFV + GED+F+H S++
Sbjct: 34 LTENMRVPSFERLPSPTPRYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNL 85
>UniRef50_Q48493 Cluster: Major cold shock protein; n=50;
Bacteria|Rep: Major cold shock protein - Klebsiella
pneumoniae
Length = 46
Score = 33.5 bits (73), Expect = 6.3
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 264 KGHGFVKPEKGGEDIFLHISDIEGE 338
KG GF+ P+ G +D+F+H S I+ +
Sbjct: 2 KGFGFISPKDGSKDVFVHFSAIQSD 26
>UniRef50_Q1FKR2 Cluster: Cold-shock protein, DNA-binding; n=2;
Clostridium|Rep: Cold-shock protein, DNA-binding -
Clostridium phytofermentans ISDg
Length = 70
Score = 33.1 bits (72), Expect = 8.4
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 234 TGKIKTFCREKGHGFVKPEKGGEDIFLHISDIE 332
TG +K + E+G+GFV G D+FLH S I+
Sbjct: 5 TGTVKWYDSERGYGFVS-TNDGRDVFLHHSQIK 36
>UniRef50_A4BC11 Cluster: Cold shock protein; n=1; Reinekea sp.
MED297|Rep: Cold shock protein - Reinekea sp. MED297
Length = 153
Score = 33.1 bits (72), Expect = 8.4
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 231 ETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEG 335
E G +K F KG GFV + G ED+F+H I G
Sbjct: 86 EEGLVKWFNVSKGFGFVTRDNG-EDVFVHFRSIRG 119
>UniRef50_A1TSW1 Cluster: Cold-shock DNA-binding domain protein;
n=2; Acidovorax avenae subsp. citrulli AAC00-1|Rep:
Cold-shock DNA-binding domain protein - Acidovorax
avenae subsp. citrulli (strain AAC00-1)
Length = 224
Score = 33.1 bits (72), Expect = 8.4
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEG 335
G I ++ +G GF++P +GG+ +F+HI +G
Sbjct: 5 GVIASWNDARGFGFIEPLQGGDPVFVHIKAFQG 37
>UniRef50_A0YCJ0 Cluster: Cold-shock DNA-binding protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Cold-shock
DNA-binding protein - marine gamma proteobacterium
HTCC2143
Length = 144
Score = 33.1 bits (72), Expect = 8.4
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 231 ETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEG 335
E G +K F KG+GFV GE+IF+H I G
Sbjct: 77 EIGTVKWFNVSKGYGFV-TRASGEEIFVHFRSISG 110
>UniRef50_Q9VMU5 Cluster: CG14039-PA, isoform A; n=9; Diptera|Rep:
CG14039-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 721
Score = 33.1 bits (72), Expect = 8.4
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +3
Query: 117 NSDDSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHGF 278
+++DS + + ++P P + R R+AS R GNP E G C G GF
Sbjct: 26 SAEDSHTASTTPTRIPHPAVARFRRSASL--RLRGNPAELGLRAEHCPAGGGGF 77
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 756,319,038
Number of Sequences: 1657284
Number of extensions: 15898248
Number of successful extensions: 37095
Number of sequences better than 10.0: 171
Number of HSP's better than 10.0 without gapping: 35664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37060
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68731504465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -