Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B07
         (801 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0202 - 1638978-1639571                                           41   0.001
02_01_0158 - 1103461-1104186                                           39   0.005
01_06_1842 - 40278875-40280131                                         30   1.9  
01_06_0433 - 29311749-29311859,29311958-29312116,29312208-293123...    29   3.3  
11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993     29   5.7  
03_06_0109 - 31717691-31718311,31719110-31719223,31719316-317196...    29   5.7  
03_02_0528 + 9189215-9189330,9190111-9190204,9190654-9190743,919...    29   5.7  
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75...    28   9.9  

>08_01_0202 - 1638978-1639571
          Length = 197

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +3

Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE-YVPLPGDEVI 368
           G +K F   KG GF+ P+ GGED+F+H S ++ + Y  L   +V+
Sbjct: 8   GTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSDGYRSLNDGDVV 52


>02_01_0158 - 1103461-1104186
          Length = 241

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 237 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 338
           G +K F   KG GF+ P+ G ED+F+H S I+ +
Sbjct: 9   GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKAD 42


>01_06_1842 - 40278875-40280131
          Length = 418

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 371 STLPNPT*VRKISSCPCAHNSSHSGETRQVGRTTSV 478
           +T P P   RK+SS PC+ ++S  GET       S+
Sbjct: 230 ATAPGPAPARKVSSAPCSRSNSR-GETSAAAPPPSI 264


>01_06_0433 -
           29311749-29311859,29311958-29312116,29312208-29312315,
           29312449-29312531,29312617-29312786,29312833-29312903,
           29313170-29313302,29313483-29313749,29313865-29313969,
           29314053-29314144,29314263-29314363,29314426-29314552,
           29315025-29315140,29315222-29315291,29315476-29315685
          Length = 640

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -2

Query: 413 SLKFFELRWDWAKSIYNFI-TRQGYIFTFDIRYMEKYIFAPFFRFHKSVTFLSAERLDFT 237
           +LK+F+  W     IY++  T+    F+F +    +++F P      +V  L+ + +DF 
Sbjct: 187 ALKWFDFTWQPIDEIYSYFGTKIAIYFSF-LGMYTRWLFFP------AVFGLATQLIDFG 239

Query: 236 SFQWI 222
           S QW+
Sbjct: 240 SLQWL 244


>11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993
          Length = 1125

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 372 RLCPIPPKFEKFQAVHVRIIHLTPEKHVKWDEPPL*QLRTLDM 500
           R+  +P + +K + + +  +  T  + + W+   L QLRTLD+
Sbjct: 712 RITKLPQEIQKLKQLEILYVRSTGIEELPWEIGELKQLRTLDV 754


>03_06_0109 -
           31717691-31718311,31719110-31719223,31719316-31719606,
           31719698-31720006,31720098-31720865
          Length = 700

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
 Frame = -2

Query: 455 DVFLRSEMNYAHMDSLKFFELRWDWAKSIYNFITRQGYI---FTFDIRYMEKYIFAPFFR 285
           D   R+  ++   D L   + RW +     N +TR   I   F F++      IF  FF 
Sbjct: 349 DFLKRTVPHFKDNDELGLVQARWSFVNKDENLLTRLQNINLCFHFEVEQQVNGIFLNFFG 408

Query: 284 FHKSVTFLSAERLD 243
           F+ +      + LD
Sbjct: 409 FNGTAGVWRIKALD 422


>03_02_0528 +
           9189215-9189330,9190111-9190204,9190654-9190743,
           9191601-9191717,9192187-9192259,9192335-9192453,
           9192569-9192690,9192777-9192953,9193189-9193333,
           9193458-9193636,9193742-9193991
          Length = 493

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +3

Query: 324 DIEGEYVPLPGDEV--IYRLCPIPPKFEKFQAVH 419
           D EG+  PLPG E+  I+R+ P PP  +K+Q  H
Sbjct: 338 DQEGD--PLPGTELKEIWRVAPTPPN-DKYQYTH 368


>02_01_0102 -
           749122-749799,750123-750371,750753-750851,751380-751889,
           752025-753905,754093-754296,754807-754899,755036-755122,
           755241-755328,755533-755645,755943-757259,757398-758672,
           759166-759273
          Length = 2233

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 156 QLPSPIITRRNRTASTSERALGNPLETGKI 245
           Q+  P +T R R+A++S    G P+E+G I
Sbjct: 487 QVSGPPVTNRERSATSSADEHGRPVESGGI 516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,751,088
Number of Sequences: 37544
Number of extensions: 417828
Number of successful extensions: 860
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)