Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B03
         (362 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    27   1.2  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   1.6  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    26   2.1  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   6.3  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    24   6.3  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    24   8.3  

>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 135 YMIKTPAR*TNSSSYNEKTRKNFVPHYSKFSYPKLHKCFRSI 10
           Y IK P   TN S    K +  F+P Y+K   P+L   ++ +
Sbjct: 408 YPIKPP---TNISEIPRKLKSGFIPPYAKRVVPRLSAKYKLV 446


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 279 FTTSIIRDSFQAIHFIRITSKPHIPLVQRTTPSIS 175
           F   + RD +    F+    KPH  LV+ + PS++
Sbjct: 80  FDFDVCRDCYAKQAFLHPCPKPHFVLVRSSIPSVA 114


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 90  NEKTRKNFVPHYSKFSYPKLHK 25
           + KTR++F PH S  S+  LH+
Sbjct: 204 DSKTRQSFPPHSSSSSHNSLHE 225


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 102 SSSYNEKTRKNFVPHYSKFSY 40
           SSSY E+TRK F  H++ F +
Sbjct: 78  SSSY-EQTRKPFFHHFNPFEF 97


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 43  REFRIMWYEILPSFFIITAAVGLPGWGLY 129
           +EF  +W  IL + FII++   +   GLY
Sbjct: 342 KEFYELWNSILQNHFIISSRNIIDSLGLY 370


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +3

Query: 18  ENTCVTWDTRI*NNVVRNSSEFFHYNCCCW 107
           + + + WD       +R+    F  +CCCW
Sbjct: 276 DKSVILWDAFT-GEKLRDYKHGFSVSCCCW 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,308,932
Number of Sequences: 5004
Number of extensions: 23779
Number of successful extensions: 44
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)