Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_B03
(362 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16... 27 3.4
04_04_0584 + 26381220-26381232,26381583-26381594,26381921-263820... 27 3.4
04_03_0363 - 14942195-14942203,14942421-14943417,14944178-14944278 27 3.4
01_07_0167 - 41613834-41613842,41614060-41615056,41615456-416163... 27 3.4
03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,367... 27 4.5
11_06_0047 + 19595904-19596185,19596284-19596424,19597195-195973... 27 6.0
01_07_0302 - 42611150-42611812,42611881-42611961,42612064-426121... 27 6.0
04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680 26 7.9
>07_01_0024 +
159839-159923,160395-160442,160884-160895,161347-161427,
161530-161675,161918-161965,162054-162203,165647-165706,
165788-165859,165960-166409,166640-166839,167239-168236,
168676-168683,169057-169230,169341-169659,169748-169824,
169897-169966,170040-170111,170204-170418,170540-170665,
170751-171046,171133-171157,171163-171303,171400-171498,
171571-171702,171793-171912
Length = 1407
Score = 27.5 bits (58), Expect = 3.4
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 84 KTRKNFVPHYSKFSY-PKLHKCFRSIG 7
+TRKNF+P YSK + P +H S G
Sbjct: 481 RTRKNFIPVYSKTDFCPFIHSTALSEG 507
>04_04_0584 +
26381220-26381232,26381583-26381594,26381921-26382028,
26382137-26382217,26382320-26382465,26382550-26382624,
26382709-26382756,26382845-26382994,26383081-26383140,
26383394-26384274,26384674-26385670,26385887-26385895
Length = 859
Score = 27.5 bits (58), Expect = 3.4
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 84 KTRKNFVPHYSKFSY-PKLHKCFRSIG 7
+TRKNF+P YSK + P +H S G
Sbjct: 555 RTRKNFIPVYSKTDFCPFIHSTALSEG 581
>04_03_0363 - 14942195-14942203,14942421-14943417,14944178-14944278
Length = 368
Score = 27.5 bits (58), Expect = 3.4
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 84 KTRKNFVPHYSKFSY-PKLHKCFRSIG 7
+TRKNF+P YSK + P +H S G
Sbjct: 64 RTRKNFIPVYSKTDFCPFIHSTALSEG 90
>01_07_0167 -
41613834-41613842,41614060-41615056,41615456-41616336,
41616437-41616508,41616590-41616649,41616736-41616885,
41616974-41617021,41617107-41617181,41617266-41617411,
41617514-41617594,41617703-41617810,41618046-41618057,
41618137-41618148,41618499-41618546,41619021-41619105
Length = 927
Score = 27.5 bits (58), Expect = 3.4
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 84 KTRKNFVPHYSKFSY-PKLHKCFRSIG 7
+TRKNF+P YSK + P +H S G
Sbjct: 623 RTRKNFIPVYSKTDFCPFIHSTALSEG 649
>03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,
3675973-3676042,3676157-3676224
Length = 1337
Score = 27.1 bits (57), Expect = 4.5
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -2
Query: 313 STHLLNTN*IIFYYFNYPG*LPSHSLHKDYQ*ASY-PSGTTHD 188
ST L+ N +IFY F L H+L KD + + P TT+D
Sbjct: 949 STELILYNILIFYLFRRRHILQVHNLLKDMKSNGFSPDTTTYD 991
>11_06_0047 +
19595904-19596185,19596284-19596424,19597195-19597307,
19597970-19598049,19598557-19598720,19598931-19599060,
19599155-19599254,19599452-19599500,19599775-19599849,
19600026-19600124,19600745-19600823,19600897-19601045,
19601334-19601393,19601490-19601684
Length = 571
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 76 PSFFIITAAVGLPGWGLYHIHNLTLGNHYRRS 171
P+F ITAAVG+ WG + +L YR S
Sbjct: 305 PNFSRITAAVGIWSWGAISLAFASLVMFYRVS 336
>01_07_0302 -
42611150-42611812,42611881-42611961,42612064-42612150,
42612283-42612378,42612479-42612543,42612919-42612975,
42613066-42613147,42613235-42613327,42613714-42613785,
42613881-42613985
Length = 466
Score = 26.6 bits (56), Expect = 6.0
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +1
Query: 133 IHNLTLGNHY--RRSLTDRWSRALYQRDMRLTGNPY-EVNGL 249
I NL LGN+ RRS + S Y R++ L GNP E +GL
Sbjct: 202 ILNLDLGNNLIERRSDLEVLSELHYLRNLNLQGNPIAEKDGL 243
>04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680
Length = 936
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 115 GWGLYHIHNLTLGNHYRRSLTDRWSRALYQRDMRLTGNPYEVNGLE 252
GW ++H TL N + S+ +R+ ++ +PYE+NGL+
Sbjct: 342 GWRIFH---RTLSNGLQGSMILVTTRSSKVANLVSNSDPYELNGLQ 384
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,902,689
Number of Sequences: 37544
Number of extensions: 137113
Number of successful extensions: 299
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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