Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B02
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   2.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   3.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   3.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 257 LSRHHRNGNTDKMPFNHYIIFS*SMKCIHKL 349
           L+ HHRN +T +M     ++F   + CI ++
Sbjct: 316 LNYHHRNADTHEMSEWVKVVFLYWLPCILRM 346


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 233 KTPAMPEALSRHHRNGNTDKMPF 301
           KT A+P  L+RH+R  +T + P+
Sbjct: 99  KTFAVPARLTRHYRT-HTGEKPY 120


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 158 GSPFSTPAGCESELGFGHYEAS 93
           GS   TP     EL  GHY++S
Sbjct: 752 GSIVGTPVHMAPELLSGHYDSS 773


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 158 GSPFSTPAGCESELGFGHYEAS 93
           GS   TP     EL  GHY++S
Sbjct: 790 GSIVGTPVHMAPELLSGHYDSS 811


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 388 FQTVLLLGKCSVEQFMDTFH*L*EYNIMIKR 296
           + +VL +   S+E+++  +H L  Y   +KR
Sbjct: 119 YVSVLTIVAFSIERYLAIYHPLRHYRSGLKR 149


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 262  PTPPKRKHRQN 294
            P PP R H QN
Sbjct: 1860 PPPPPRNHDQN 1870


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 211 NLFRMKLKNSCYARS 255
           N++++ LKN  Y RS
Sbjct: 674 NMYKLDLKNMKYTRS 688


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,605
Number of Sequences: 438
Number of extensions: 2287
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)