Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B01
         (675 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O96244 Cluster: Putative uncharacterized protein PFB075...    36   1.2  
UniRef50_P48906 Cluster: NADH-ubiquinone oxidoreductase chain 2;...    33   8.4  

>UniRef50_O96244 Cluster: Putative uncharacterized protein PFB0755w;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFB0755w - Plasmodium falciparum
           (isolate 3D7)
          Length = 1643

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +3

Query: 537 HVHQFLKDIFYLSWGIFPELFI----YKKYICLCKYNCDCK 647
           H+    K+ FY  +  + ELFI    Y +Y+CL KYN  CK
Sbjct: 403 HMFYLRKENFYFFYTFYFELFINSYLYNRYVCLKKYNDKCK 443


>UniRef50_P48906 Cluster: NADH-ubiquinone oxidoreductase chain 2;
           n=1; Pichia canadensis|Rep: NADH-ubiquinone
           oxidoreductase chain 2 - Pichia canadensis (Yeast)
           (Hansenula wingei)
          Length = 567

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -1

Query: 654 IHFYNHNYIYTNKY-IFCI*IILGRYPKIDRRYL*ETDVHEKL*FILYTLNIIYLFLKI 481
           I+ Y  NYI  N+Y IFC+ II+G +  I   +      + K   ++ ++N  YLFL +
Sbjct: 409 IYIYELNYIKNNRYLIFCLIIIIGSFIGIPPLF----GFYGKYYLLISSINSNYLFLSL 463


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 564,901,425
Number of Sequences: 1657284
Number of extensions: 10329194
Number of successful extensions: 19988
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19976
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)