Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_B01
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    31   0.20 
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    28   1.4  
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c...    27   3.3  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    26   4.3  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    26   5.7  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   7.6  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   7.6  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   10.0 
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   10.0 

>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +2

Query: 200 EN*KSYQEIKKIQIVS*IGCQHASAFVKMKGEKRRL 307
           E  K+  ++ KIQ +S  G QHAS F+ +KG K+ L
Sbjct: 67  ERLKASVDVSKIQAISGAGQQHASVFL-LKGSKKAL 101


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 317 ITFMLCLCTQHLTVGFVYSIKFID 388
           IT + CLC  +  + F++ +KFID
Sbjct: 130 ITSLSCLCKFYTKLRFIWGVKFID 153


>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 143

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 48  LLMFVINNVT*YRYCNISRHLCLCFQMI 131
           LL    N++T Y++  I +H C CFQ +
Sbjct: 44  LLTTSSNSLTHYQWYLIYKHTCRCFQQV 71


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 525 IIAFHVHQFLKDIFYLSWGIFPELFIYKKY 614
           II F V + LKD F   WG+   LF +  +
Sbjct: 195 IIGFFVRKGLKDSFGEQWGLKTSLFAHVSF 224


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 531 AFHVHQFLKDIFYLSWGIFPELFIYKKYICLCKYNCD 641
           A+++H  + D+ +L WG  P+  + ++YI    YN D
Sbjct: 807 AYNLHG-VDDVEFLPWGKDPKTNLSRRYINYKVYNYD 842


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 529  IIHIVHTEYYLFISKNSE 476
            ++ I+ +EYYLF ++N E
Sbjct: 1091 LLEIIKSEYYLFFNRNRE 1108


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 242 LFEFS*FLDRIFNSLVHLSLHFLS--NSLTTKECVMIILYHLKT 117
           +  FS  L RI    +H     LS  N +T  +C+ IIL +L+T
Sbjct: 783 MLNFSSNLFRIIWQKLHEQPDILSPCNEMTVIDCIRIILIYLRT 826


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 226  QENSNSQLN-WMSTCQCIRENERGEKK 303
            +ENS +Q N W+  CQ  R    G K+
Sbjct: 1390 RENSRNQANSWIGNCQLCRTRVTGYKR 1416


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +3

Query: 510 VCTI*IIAFHVHQFLKDIFY---LSWGIFPELFIYKKYICLCKYN 635
           V TI +I + + + LK+  +   L+W +   +  +K+Y   CK++
Sbjct: 174 VLTIALINYLISKSLKNSIFNPLLTWTLDISVVFFKEYFAYCKFS 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,054
Number of Sequences: 5004
Number of extensions: 49615
Number of successful extensions: 98
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)