Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_A23
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    28   1.7  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    27   3.0  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    27   3.9  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   6.9  
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    25   9.1  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   9.1  
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    25   9.1  

>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
 Frame = +2

Query: 284 SGFPAPAPRAHPALSPTERSPAKAG-------LHVNFSDKGEVKERREKFLTAKYGS 433
           S  P P PR     S   R P K         L  NF DKG V ++R    T K  S
Sbjct: 511 SASPPPVPRLSITRSQVSREPEKPEEIPSVPPLPSNFKDKGHVPQQRSVSYTPKRSS 567


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
 Frame = +2

Query: 293 PAPAPRAHPALSPTERSPAKAGLHVNFSD-KGEVKERREKFLTAK----YGSHQMALIRK 457
           P+   R+ P    + +         N S  +G  K++  K L  K    YG+H  +L + 
Sbjct: 56  PSKPIRSQPLTPSSSKGAGNEPKSQNSSTTRGSAKKQSSKGLEEKLINSYGTHVESLNKG 115

Query: 458 RLAVEMWLYDE 490
           R  +E+W Y E
Sbjct: 116 RRLIEIWKYYE 126


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 403 REVPNGEVWQPSDGTDTQA 459
           R +PN   W+P+DG +T A
Sbjct: 494 RAMPNINCWRPADGNETSA 512


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 293 PAPAPRAHPALSPTERSPAKAGLHVNFSDKGEVKERREKFLTAKYGSHQMAL 448
           P P P  + + +P  RS   + + VN   +GE+ +    F+  +  +   AL
Sbjct: 37  PPPFPSTNASYAPVIRSCDSSEIMVNSLPRGELPDLENDFIEKRLSNANEAL 88


>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -3

Query: 702 VLYRVLALXNNSLINLWTSFCGFLASASNVARW 604
           +  +V  +   SL+N+WT    F  ++++V ++
Sbjct: 89  IAQKVSTMQGKSLLNIWTKSLSFFVTSTDVFKY 121


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 293 PAPAPRAHPALSPTERSPAKA 355
           P P P++HP ++    SPA+A
Sbjct: 113 PPPQPQSHPNVTVISASPARA 133


>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -1

Query: 173 LQHSTQHYNGYVDDHTL--DTRGSFRGTQRPNASAMRL 66
           + HS  H  GY DDH +  D +   +G +R     + L
Sbjct: 25  VSHSKSHLEGYDDDHKIAFDPKDLEQGAEREKQPRLTL 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,899
Number of Sequences: 5004
Number of extensions: 33153
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)